Search result

BaseInfo

ncRNA ID	novel_bra_miR110
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:550281-550354 [-]
Reference genome	Brapa_1.0
Source	SRR1485286;SRR1485288;SRR1485289;SRR1592475;SRR1161445;SRR1592476;SRR1592477;SRR1592478;SRR1776796;SRR1776877;SRR1776889;SRR1776899;SRR1777714;SRR2912891;SRR2912893;SRR2912894;SRR1485262;SRR1485263;SRR1485265;SRR1485269
Length	21
Mature sequence(if miRNA)	1 - GCAAGUUGACUUUGGCUCUGU - 21
Stem-loop(if miRNA)	--U         A          ---A   AU     UA    GAGCCAAAG UGACUUGCCG    CCA  GAAUC  A    ||||||||| ||||||||||    |||  |||||  A    CUCGGUUUC GUUGAACGGC    GGU  UUUAG  A UGU         A          CAAC   --     UC
Stem-loop sequence	UGAGCCAAAGAUGACUUGCCGACCAAUGAAUCUAAAACUGAUUUUGGCAACCGGCAAGUUGACUUUGGCUCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009133210.2	ncRNA:21   UGUCUCGGUUUCAGUUGAACG   1   |*||||*||||*||||||||| targets:385   AAAGAGGCAAAUUCAACUUGC   405 Target Full Sequence	2.5	PREDICTED: Brassica rapa myb-related protein Hv1-like (LOC103856130), mRNA	myb-related protein Hv1-like(LOC103856130)	coding protein	psRNATarget
XM_009123336.2	ncRNA:21   UGUCUCGGUUUCAGUUGAACG   1   |*||||*||||*||||||||| targets:462   AAAGAGGCAAAUUCAACUUGC   482 Target Full Sequence	2.5	PREDICTED: Brassica rapa myb-related protein Hv1 (LOC103846421), mRNA	myb-related protein Hv1(LOC103846421)	coding protein	psRNATarget
XM_009127796.2	ncRNA:21   UGUCUCGGUUUCAGUUGAACG   1   |*||||*||||*||||||||| targets:622   AAAGAGGCAAAUUCAACUUGC   642 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB34-like (LOC103850980), mRNA	transcription factor MYB34-like(LOC103850980)	coding protein	psRNATarget