Search result

BaseInfo

ncRNA ID	novel_bra_miR108
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:7572056-7572151 [-]
Reference genome	Brapa_1.0
Source	SRR1485286;SRR1776796;SRR1776880;SRR1776899;SRR1777714;SRR2912893;SRR2912894
Length	21
Mature sequence(if miRNA)	76 - UAGCCAAGGAUGACUUGCCUG - 96
Stem-loop(if miRNA)	--     A    U    U      -    UAAC    UA   C     UUA   UAGCC AGGA GACU GCCUGC GUCU    ACCA  UCA AGACU   U   ||||| |||| |||| |||||| ||||    ||||  ||| |||||   AUCGG UCCU CUGA CGGAUG CGGA    UGGU  AGU UCUGA   C UU     C    -    -      U    ---U    UG   C     UAG
Stem-loop sequence	UAGCCAAGGAUGACUUGCCUGCGUCUUAACACCAUAUCACAGACUUUAUCGAUAGUCUCUGAGUUGGUUAGGCUGUAGGCAGUCUCCUCGGCUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009108686.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||| targets:969   AAGGGAAGUCAUCCUUGGCUA   989 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832630), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832630)	coding protein	psRNATarget
XM_009108684.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||| targets:1002   AAGGGAAGUCAUCCUUGGCUA   1022 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832630), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832630)	coding protein	psRNATarget
XM_009108685.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||| targets:1061   AAGGGAAGUCAUCCUUGGCUA   1081 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832630), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832630)	coding protein	psRNATarget
XM_018653422.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||| targets:1062   AAGGGAAGUCAUCCUUGGCUA   1082 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832630), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_009108817.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:932   AGGGGAAGUCAUCCUUGGCUA   952 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832749), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832749)	coding protein	psRNATarget
XM_009108819.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:940   AGGGGAAGUCAUCCUUGGCUA   960 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832749), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832749)	coding protein	psRNATarget
XM_009108816.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:943   AGGGGAAGUCAUCCUUGGCUA   963 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832749), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832749)	coding protein	psRNATarget
XM_009129706.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:1283   GGGGGAAGUCAUCCUUGGCUA   1303 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-3-like (LOC103852805), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC103852805)	coding protein	psRNATarget
XM_018656216.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:1287   GGGGGAAGUCAUCCUUGGCUA   1307 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-3-like (LOC103852805), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009107701.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:1291   AGGGGAAGUCAUCCUUGGCUA   1311 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-3-like (LOC103831785), mRNA	nuclear transcription factor Y subunit A-3-like(LOC103831785)	coding protein	psRNATarget
XM_009106594.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:1325   AGGGGAAGUCAUCCUUGGCUA   1345 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-3-like (LOC103830778), mRNA	nuclear transcription factor Y subunit A-3-like(LOC103830778)	coding protein	psRNATarget
XM_009119403.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||= targets:1394   AAGGGAAGUCAUCCUUGGCUG   1414 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-8 (LOC103842742), mRNA	nuclear transcription factor Y subunit A-8(LOC103842742)	coding protein	psRNATarget