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BaseInfo

ncRNA ID	novel_bra_miR100
Species	Brassica rapa
Class	miRNA
Genome position	ChrA5:20938086-20938183 [+]
Reference genome	Brapa_1.0
Source	SRR1485286;SRR1592475;SRR1592476;SRR1592477;SRR1592478;SRR1776796;SRR1776877;SRR1776880;SRR1776889;SRR1776899;SRR1777714;SRR2912891;SRR2912893;SRR2912894;SRR1485281
Length	21
Mature sequence(if miRNA)	1 - CAGCCAAGGAUGACUUGCCGA - 21
Stem-loop(if miRNA)	--C         UG           --  AAAUAUCUGAUAAGUAUUUUG    AGCCAAGGA  ACUUGCCGAUU  UA                     U    |||||||||  |||||||||||  ||    UCGGUUCCU  UGAACGGCUAG  CU                     U AUA         GU           UA  AAAAAAAAGAAAUUUUAUGCU
Stem-loop sequence	CAGCCAAGGAUGACUUGCCGAUUUAAAAUAUCUGAUAAGUAUUUUGUUUCGUAUUUUAAAGAAAAAAAAUCAUGAUCGGCAAGUUGUCCUUGGCUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009119403.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||| targets:1394   AAGGGAAGUCAUCCUUGGCUG   1414 Target Full Sequence	1.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-8 (LOC103842742), mRNA	nuclear transcription factor Y subunit A-8(LOC103842742)	coding protein	psRNATarget
XM_009118984.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1092   ACGGGAAGUCAUCCUUGGCUA   1112 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-6 (LOC103842343), transcript variant X8, mRNA	nuclear transcription factor Y subunit A-6(LOC103842343)	coding protein	psRNATarget
XM_009118983.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1096   ACGGGAAGUCAUCCUUGGCUA   1116 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-6 (LOC103842343), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-6(LOC103842343)	coding protein	psRNATarget
XM_009118968.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1130   ACGGGAAGUCAUCCUUGGCUA   1150 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-6 (LOC103842343), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-6(LOC103842343)	coding protein	psRNATarget
XM_009118964.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1134   ACGGGAAGUCAUCCUUGGCUA   1154 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-6 (LOC103842343), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-6(LOC103842343)	coding protein	psRNATarget
XM_009118978.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1151   ACGGGAAGUCAUCCUUGGCUA   1171 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-6 (LOC103842343), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-6(LOC103842343)	coding protein	psRNATarget
XM_009118972.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1155   ACGGGAAGUCAUCCUUGGCUA   1175 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-6 (LOC103842343), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-6(LOC103842343)	coding protein	psRNATarget
XM_009118982.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1575   ACGGGAAGUCAUCCUUGGCUA   1595 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-6 (LOC103842343), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-6(LOC103842343)	coding protein	psRNATarget
XM_009118957.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||*|||||||||||||||* targets:1581   ACGGGAAGUCAUCCUUGGCUA   1601 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-6 (LOC103842343), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-6(LOC103842343)	coding protein	psRNATarget
XM_009149296.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=||*|||||||||||||||* targets:1066   GUGGGAAGUCAUCCUUGGCUA   1086 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5 (LOC103871071), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5(LOC103871071)	coding protein	psRNATarget
XM_009149295.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=||*|||||||||||||||* targets:1090   GUGGGAAGUCAUCCUUGGCUA   1110 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5 (LOC103871071), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5(LOC103871071)	coding protein	psRNATarget
XM_009108817.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:932   AGGGGAAGUCAUCCUUGGCUA   952 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832749), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832749)	coding protein	psRNATarget
XM_009108819.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:940   AGGGGAAGUCAUCCUUGGCUA   960 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832749), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832749)	coding protein	psRNATarget
XM_009108816.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:943   AGGGGAAGUCAUCCUUGGCUA   963 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832749), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832749)	coding protein	psRNATarget
XM_009108686.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:969   AAGGGAAGUCAUCCUUGGCUA   989 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832630), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832630)	coding protein	psRNATarget
XM_009108684.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1002   AAGGGAAGUCAUCCUUGGCUA   1022 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832630), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832630)	coding protein	psRNATarget
XM_009108685.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1061   AAGGGAAGUCAUCCUUGGCUA   1081 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832630), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5-like(LOC103832630)	coding protein	psRNATarget
XM_018653422.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1062   AAGGGAAGUCAUCCUUGGCUA   1082 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-5-like (LOC103832630), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_009129706.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1283   GGGGGAAGUCAUCCUUGGCUA   1303 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-3-like (LOC103852805), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC103852805)	coding protein	psRNATarget
XM_018656216.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1287   GGGGGAAGUCAUCCUUGGCUA   1307 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-3-like (LOC103852805), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009107701.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1291   AGGGGAAGUCAUCCUUGGCUA   1311 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-3-like (LOC103831785), mRNA	nuclear transcription factor Y subunit A-3-like(LOC103831785)	coding protein	psRNATarget
XM_009106594.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   **||*|||||||||||||||* targets:1325   AGGGGAAGUCAUCCUUGGCUA   1345 Target Full Sequence	2.0	PREDICTED: Brassica rapa nuclear transcription factor Y subunit A-3-like (LOC103830778), mRNA	nuclear transcription factor Y subunit A-3-like(LOC103830778)	coding protein	psRNATarget