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BaseInfo

ncRNA ID	novel_bra_miR96
Species	Brassica rapa
Class	miRNA
Genome position	ChrA2:24491329-24491410 [+]
Reference genome	Brapa_1.0
Source	SRR1160826;SRR1592477;SRR1161445
Length	21
Mature sequence(if miRNA)	62 - CACGUGUUCUACUACUCCAAC - 82
Stem-loop(if miRNA)	--     A  C              CA    A       CGG   UGGAG AG AGGGCACGUGCGAA  AAUG GAUCGAU   U   ||||| || ||||||||||||||  |||| |||||||   ACCUC UC UCUUGUGCACGCUU  UUAU CUAGUUG   A CA     A  A              --    A       UAU
Stem-loop sequence	UGGAGAAGCAGGGCACGUGCGAACAAAUGAGAUCGAUCGGUAUAUGUUGAUCAUAUUUUCGCACGUGUUCUACUACUCCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009109641.2	ncRNA:21   CAACCUCAUCAUCUUGUGCAC   1   **|||||*||*|||||||||| targets:847   UGUGGAGAAGCAGAACACGUG   867 Target Full Sequence	2.5	PREDICTED: Brassica rapa outer envelope pore protein 16-2, chloroplastic-like (LOC103833555), mRNA	outer envelope pore protein 16-2, chloroplastic-like(LOC103833555)	coding protein	psRNATarget
XM_018653690.1	ncRNA:21   CAACCUCAUCAUCUUGUGCAC   1   |**||||*||||||||||||* targets:1352   GCGGGAGGAGUAGAACACGUC   1372 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103833994 (LOC103833994), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009110047.2	ncRNA:21   CAACCUCAUCAUCUUGUGCAC   1   |**||||*||||||||||||* targets:2830   GCGGGAGGAGUAGAACACGUC   2850 Target Full Sequence	3.0	PREDICTED: Brassica rapa uncharacterized LOC103833994 (LOC103833994), transcript variant X1, mRNA	uncharacterized LOC103833994(LOC103833994)	coding protein	psRNATarget