| ncRNA ID | novel_bra_miR89 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA2:1458045-1458176 [-] |
| Reference genome | Brapa_1.0 |
| Source | SRR1485286;SRR1160826;SRR1776880;SRR1485268 |
| Length | 21 |
| Mature sequence(if miRNA) | 1 - CAUGUGCCCAUCUUCCCCAUC - 21 |
| Stem-loop(if miRNA) |
-- A CA CAUU UCUCUUA UC GUA - CCC A C UGG GAAG GGGCACGUG ACUAACUCA G CAC UAUACA CUCU CA AUG A ||| |||| ||||||||| ||||||||| | ||| |||||| |||| || ||| ACC CUUC CCCGUGUAC UGAUUGAGU U GUG GUGUGU GAGA GU UAU U CU C UA UUCU ------- GU -AA A -UA A G |
| Stem-loop sequence | UGGAGAAGCAGGGCACGUGCAUUACUAACUCAUCUCUUAGUCCACGUAUAUACACUCUCCCCAAAUGCAUGUAUAUGAUAGAGAUGUGUGAAGUGUGUUGAGUUAGUUCUUCAUGUGCCCAUCUUCCCCAUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009121555.2 |
|
2.5 | PREDICTED: Brassica rapa beta-carotene 3-hydroxylase 2, chloroplastic (LOC103844746), mRNA | beta-carotene 3-hydroxylase 2, chloroplastic(LOC103844746) | coding protein | psRNATarget |