ncRNA ID | novel_bra_miR87 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA2:3253046-3253261 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1160826;SRR1161445 |
Length | 21 |
Mature sequence(if miRNA) | 1 - AGAGCAUCAUUAUCGGAGAUC - 21 |
Stem-loop(if miRNA) |
--  A  -   A         AUCUUUCAAA       CCA    A       UA         UAGU              U    A A     C    --UAUAG    UG   AG GC AUC UUAUCGGAG          UAGAAUU   CACC UAUAUAU  AUAUUAUGG    AGAGUUUUUCAAAA GCUU A AGACU AUGC       UCUU  G   || || ||| |||||||||          |||||||   |||| |||||||  |||||||||    |||||||||||||| |||| | ||||| ||||       ||||   UC CG UAG AGUAGCCUC          AUCUUAA   GUGG AUAUAUA  UAUAAUGCC    UCUCAAAGAGUUUU CGAA U UCUGA UACG       AGGA  U GA  C  A   G         -AAAAAAUUG       ACA    G       --         ---U              -    C C     A    UUUUUAA    UU |
Stem-loop sequence | AGAGCAUCAUUAUCGGAGAUCUUUCAAAUAGAAUUCCACACCAUAUAUAUUAAUAUUAUGGUAGUAGAGUUUUUCAAAAUGCUUAAAAGACUCAUGCUAUAGUCUUUGGUUUAGGAAAUUUUUGCAUAAGUCUCUCAAGCUUUUGAGAAACUCUUCCGUAAUAUAUAUAUAGGGUGACAAAUUCUAGUUAAAAAACUCCGAUGAGGAUAGCCCUAG |