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BaseInfo

ncRNA ID novel_bra_miR87
Species Brassica rapa
Class miRNA
Genome position ChrA2:3253046-3253261 [+]
Reference genome Brapa_1.0
Source SRR1160826;SRR1161445
Length 21
Mature sequence(if miRNA) 1 - AGAGCAUCAUUAUCGGAGAUC - 21
Stem-loop(if miRNA) --  A  -   A         AUCUUUCAAA       CCA    A       UA         UAGU              U    A A     C    --UAUAG    UG
  AG GC AUC UUAUCGGAG          UAGAAUU   CACC UAUAUAU  AUAUUAUGG    AGAGUUUUUCAAAA GCUU A AGACU AUGC       UCUU  G
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  UC CG UAG AGUAGCCUC          AUCUUAA   GUGG AUAUAUA  UAUAAUGCC    UCUCAAAGAGUUUU CGAA U UCUGA UACG       AGGA  U
GA  C  A   G         -AAAAAAUUG       ACA    G       --         ---U              -    C C     A    UUUUUAA    UU
Stem-loop sequence AGAGCAUCAUUAUCGGAGAUCUUUCAAAUAGAAUUCCACACCAUAUAUAUUAAUAUUAUGGUAGUAGAGUUUUUCAAAAUGCUUAAAAGACUCAUGCUAUAGUCUUUGGUUUAGGAAAUUUUUGCAUAAGUCUCUCAAGCUUUUGAGAAACUCUUCCGUAAUAUAUAUAUAGGGUGACAAAUUCUAGUUAAAAAACUCCGAUGAGGAUAGCCCUAG