ncRNA ID | novel_bra_miR85 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA2:22317160-22317307 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485286;SRR1485288;SRR1485289;SRR1592475;SRR1592476;SRR1592477;SRR1592478;SRR1776796;SRR1776877;SRR1776880;SRR1776899;SRR1777714;SRR2912891;SRR2912893;SRR1485268 |
Length | 19 |
Mature sequence(if miRNA) | 130 - GGCAGUCUCCUUGGCUAUC - 148 |
Stem-loop(if miRNA) |
--          U    U     -CU  U  UC   UC  -U        UUUAUGU                      C   UAGCCAAGGA GACU GCCUG   CU UU  ACC  CA  GAUUCAAU       AGGGUUUUGGAUUACUAUGCUU U   |||||||||| |||| |||||   || ||  |||  ||  ||||||||       |||||||||||||||||||||| A   AUCGGUUCCU CUGA CGGAC   GG AA  UGG  GU  CUAAGUUG       UUCUAAAACUUAAUGAUAUGAG A CU          -    -     UUU  C  --   GU  UU        -------                      A |
Stem-loop sequence | UAGCCAAGGAUGACUUGCCUGCUCUUUUUCACCUCCAUGAUUCAAUUUUAUGUAGGGUUUUGGAUUACUAUGCUUCUAAAGAGUAUAGUAAUUCAAAAUCUUGUUGAAUCUUUGUGGGUAACGGUUUCAGGCAGUCUCCUUGGCUAUC |