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BaseInfo

ncRNA ID ath-miRf10720-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - CCCGCGGUAUACCACGGGUUAA - NA
Stem-loop(if miRNA)      AUA G             A        U       --UCCCAAAUAU   ACAAUUAUA
AAAAU   G CCCGCGGUAUACC CGGGUUAA AUCUAGU            UAU         C
|||||   | ||||||||||||| |||||||| |||||||            |||         A
UUUUA   C GGGCGCCAUAUGG GCCCAAUU UAGAUCA            AGA         U
     --G A             C        U       UUCUAUACAAUA   CAAUUCUGA
Stem-loop sequence AAAAUAUAGGCCCGCGGUAUACCACGGGUUAAUAUCUAGUUCCCAAAUAUUAUACAAUUAUACAUAGUCUUAACAGAAUAACAUAUCUUACUAGAUUUUAACCCGCGGUAUACCGCGGGACGAUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY735617.1
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  |||||==|||||||||||||||
targets:1724   UUAACUUGUGGUAUACCGCGGG   1745

2.0 Arabidopsis thaliana hypothetical protein AT3G50120 mRNA, complete cds NA coding protein psRNATarget
NM_114872.3
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  |||||==|||||||||||||||
targets:1764   UUAACUUGUGGUAUACCGCGGG   1785

2.0 Arabidopsis thaliana transmembrane protein, putative (DUF247) mRNA transmembrane protein, putative (DUF247)(AT3G50120) coding protein psRNATarget
NM_104486.4
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  ||||||||*||||||||||||*
targets:1254   UUAACCCGCGGUAUACCGCGGA   1275

2.0 Arabidopsis thaliana interactor of constitutive active ROPs protein mRNA interactor of constitutive active ROPs protein(AT1G56080) coding protein psRNATarget
AK228030.1
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  ||||||||*||||||=||||||
targets:1624   UUAACCCGCGGUAUAUCGCGGG   1645

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-54-F18 NA coding protein psRNATarget
NM_001341628.1
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  ||||||||*||||||=||||||
targets:1690   UUAACCCGCGGUAUAUCGCGGG   1711

2.5 Arabidopsis thaliana Galactose mutarotase-like superfamily protein mRNA Galactose mutarotase-like superfamily protein(AT4G23730) coding protein psRNATarget
NM_118504.4
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  ||||||||*||||||=||||||
targets:1990   UUAACCCGCGGUAUAUCGCGGG   2011

2.5 Arabidopsis thaliana Galactose mutarotase-like superfamily protein mRNA Galactose mutarotase-like superfamily protein(AT4G23730) coding protein psRNATarget
NM_001341627.1
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  ||||||||*||||||=||||||
targets:2350   UUAACCCGCGGUAUAUCGCGGG   2371

2.5 Arabidopsis thaliana Galactose mutarotase-like superfamily protein mRNA Galactose mutarotase-like superfamily protein(AT4G23730) coding protein psRNATarget
NM_103817.2
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  |*||||||||||=||||||||*
targets:1050   UCAACCCGUGGUGUACCGCGGA   1071

2.5 Arabidopsis thaliana mechanosensitive ion channel-like protein mRNA mechanosensitive ion channel-like protein(AT1G49260) coding protein psRNATarget
AY630764.1
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  |*||||||||||=||||||||*
targets:1050   UCAACCCGUGGUGUACCGCGGA   1071

2.5 Arabidopsis thaliana hypothetical protein (At1G49260) mRNA, complete cds NA coding protein psRNATarget
EF183016.1
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  ||||||=|*||||||||||||*
targets:506   UUAACCUGCGGUAUACCGCGGA   527

3.0 Arabidopsis thaliana clone asmbl_1076 unknown mRNA sequence NA coding protein psRNATarget
NM_001123828.2
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  ||||||=|*||||||||||||*
targets:556   UUAACCUGCGGUAUACCGCGGA   577

3.0 Arabidopsis thaliana VQ motif-containing protein mRNA VQ motif-containing protein(AT1G17147) coding protein psRNATarget
NM_203122.2
ncRNA:22   AAUUGGGCACCAUAUGGCGCCC   1
  |||||*=|*|||||||||||||
targets:577   UUAACAUGCGGUAUACCGCGGG   598

3.0 Arabidopsis thaliana methyl-CPG-binding domain 12 (MBD12), partial mRNA methyl-CPG-binding domain 12(MBD12) coding protein psRNATarget
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