Search result

BaseInfo

ncRNA ID novel_bra_miR82
Species Brassica rapa
Class miRNA
Genome position ChrA9:4042494-4042627 [-]
Reference genome Brapa_1.0
Source SRR1485286;SRR1485288;SRR1485289;SRR1592475;SRR1592476;SRR1592477;SRR1161445;SRR1592478;SRR1776796;SRR1776880;SRR1125021;SRR1776889;SRR1776899;SRR1485258;SRR1777714;SRR2912894;SRR1485261;SRR1485262;SRR1485263;SRR1485264;SRR1485265;SRR1485266;SRR1485267;SRR1485268;SRR1485269;SRR1485270;SRR1485271;SRR1485273;SRR1485274;SRR1485275;SRR1485276;SRR1485277
Length 21
Mature sequence(if miRNA) 114 - UUCCACAGCUUUCUUGAACUG - 134
Stem-loop(if miRNA) --            C          ACCUUCUUCA        CU  UCUCA  UAUAUAU    C      
  UUCCACAGCUUU UUGAACUGCA          GAUUAGUU  AU     CA       AUUA CAUAGCA
  |||||||||||| ||||||||||          ||||||||  ||     ||       |||| ||||||U
  AGGGUGUCGAAA AACUUGGCGU          UUAGUCAG  UG     GU       UAAU GUAUUGA
GA            U          ----------        CU  UCUAC  -UAAAUU    U      
Stem-loop sequence UUCCACAGCUUUCUUGAACUGCAACCUUCUUCAGAUUAGUUCUAUUCUCACAUAUAUAUAUUACCAUAGCAUAGUUAUGUUAAUUUAAAUUGCAUCUGUUCGACUGAUUUGCGGUUCAAUAAAGCUGUGGGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009115171.2
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  *|*|||||||||||*||||||
targets:653   GAAUUCAAGAAAGCAGUGGAA   673

2.5 PREDICTED: Brassica rapa tropinone reductase homolog At1g07440-like (LOC103838721), transcript variant X2, mRNA tropinone reductase homolog At1g07440-like(LOC103838721) coding protein psRNATarget
XM_009115170.2
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  *|*|||||||||||*||||||
targets:737   GAAUUCAAGAAAGCAGUGGAA   757

2.5 PREDICTED: Brassica rapa tropinone reductase homolog At1g07440-like (LOC103838721), transcript variant X1, mRNA tropinone reductase homolog At1g07440-like(LOC103838721) coding protein psRNATarget
XM_009150502.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:578   CCGUUCAAGAAAGCCUGUGGAA   599

3.0 PREDICTED: Brassica rapa growth-regulating factor 4-like (LOC103872152), transcript variant X2, mRNA growth-regulating factor 4-like(LOC103872152) coding protein psRNATarget
XM_009150501.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:601   CCGUUCAAGAAAGCCUGUGGAA   622

3.0 PREDICTED: Brassica rapa growth-regulating factor 4-like (LOC103872152), transcript variant X1, mRNA growth-regulating factor 4-like(LOC103872152) coding protein psRNATarget
XM_009126991.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:762   CCGUUCAAGAAAGCCUGUGGAA   783

3.0 PREDICTED: Brassica rapa growth-regulating factor 4-like (LOC103850270), mRNA growth-regulating factor 4-like(LOC103850270) coding protein psRNATarget
XM_009145340.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:792   CCGUUCAAGAAAGCCUGUGGAA   813

3.0 PREDICTED: Brassica rapa growth-regulating factor 3-like (LOC103867286), mRNA growth-regulating factor 3-like(LOC103867286) coding protein psRNATarget
XM_009117741.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  |*||||||||||||-|||||||
targets:931   CCGUUCAAGAAAGCCUGUGGAA   952

3.0 PREDICTED: Brassica rapa growth-regulating factor 4-like (LOC103841221), mRNA growth-regulating factor 4-like(LOC103841221) coding protein psRNATarget
XM_009128900.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:384   UCGUUCAAGAAAGCAUGUGGAA   405

3.0 PREDICTED: Brassica rapa growth-regulating factor 7 (LOC103852019), transcript variant X2, mRNA growth-regulating factor 7(LOC103852019) coding protein psRNATarget
XM_009128899.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:708   UCGUUCAAGAAAGCAUGUGGAA   729

3.0 PREDICTED: Brassica rapa growth-regulating factor 7 (LOC103852019), transcript variant X1, mRNA growth-regulating factor 7(LOC103852019) coding protein psRNATarget
XM_018657727.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:629   UCGUUCAAGAAAGCAUGUGGAA   650

3.0 PREDICTED: Brassica rapa growth-regulating factor 8-like (LOC103861465), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018657726.1
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:635   UCGUUCAAGAAAGCAUGUGGAA   656

3.0 PREDICTED: Brassica rapa growth-regulating factor 8-like (LOC103861465), transcript variant X1, mRNA NA coding protein psRNATarget
XM_009144094.2
ncRNA:21   GUCAAGUUCUUUCGA-CACCUU   1
  **|||||||||||||-||||||
targets:849   ACGUUCAAGAAAGCUUGUGGAA   870

3.0 PREDICTED: Brassica rapa growth-regulating factor 9 (LOC103866214), mRNA growth-regulating factor 9(LOC103866214) coding protein psRNATarget
XM_009139172.2
ncRNA:21   GUCAAGUUCUUUCG-ACACCUU   1
  =*||||||||||||-|||||||
targets:1122   UCGUUCAAGAAAGCAUGUGGAA   1143

3.0 PREDICTED: Brassica rapa growth-regulating factor 8-like (LOC103861465), transcript variant X2, mRNA growth-regulating factor 8-like(LOC103861465) coding protein psRNATarget
XM_009120020.2
ncRNA:21   GUCAAGUUCUUUCGACACCUU   1
  |=|**|||||||||||||||=
targets:978   CGGAACAAGAAAGCUGUGGAG   998

3.0 PREDICTED: Brassica rapa transcription factor bHLH74-like (LOC103843315), mRNA transcription factor bHLH74-like(LOC103843315) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.