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BaseInfo

ncRNA ID novel_bra_miR75
Species Brassica rapa
Class miRNA
Genome position ChrA8:838752-838835 [-]
Reference genome Brapa_1.0
Source SRR1485286
Length 22
Mature sequence(if miRNA) 1 - GCAAGUAGACUUUGGCUCUGUU - 22
Stem-loop(if miRNA) --UU         AUG          UU        GAUUAAU
    GAGCCAAAG   ACUUGCCGAU  UACCGAUG       C
    |||||||||   ||||||||||  ||||||||
    CUCGGUUUC   UGAACGGCUG  AUGGUUAU       U
UUGU         AGA          --        AGUCAAA
Stem-loop sequence UUGAGCCAAAGAUGACUUGCCGAUUUUACCGAUGGAUUAAUCUAAACUGAUAUUGGUAGUCGGCAAGUAGACUUUGGCUCUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009131511.2
ncRNA:22   UUGUCUCGGUUUCAGAUGAACG   1
  |=*||||=||||||||||||*|
targets:160   AGAAGAGUCAAAGUCUACUUAC   181

2.5 PREDICTED: Brassica rapa probable 3-ketoacyl-CoA synthase 21 (LOC103854573), mRNA probable 3-ketoacyl-CoA synthase 21(LOC103854573) coding protein psRNATarget