| ncRNA ID | novel_bra_miR70 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA8:9577876-9578044 [-] |
| Reference genome | Brapa_1.0 |
| Source | SRR1485286;SRR2912894;SRR1485262;SRR1485263;SRR1485264;SRR1485265;SRR1485270;SRR1485271;SRR1485272;SRR1485274;SRR1485275;SRR1485276;SRR1485278;SRR1485279;SRR1485280;SRR1485281;SRR1160826 |
| Length | 21 |
| Mature sequence(if miRNA) | 1 - UUGGACUGAAGGGAACUCCCU - 21 |
| Stem-loop(if miRNA) |
--A A U A UGU U -- U - A AC C CU C - -- AA GAGUUUCCUU AGUCCA UC CA UG GAUUU GAUCCAAU AG CUCC G UCAUU ACUCA UA CGAGU CA CU A |||||||||| |||||| || || || ||||| |||||||| || |||| | ||||| ||||| || ||||| || || CUCAAGGGAA UCAGGU AG GU AC UUAGA CUAGGUUA UC GAGG C AGUAA UGAGU AU GCUCA GU GG A UCC G U C --U - UU U A G GU A AC U A AA AC |
| Stem-loop sequence | AGAGUUUCCUUAAGUCCAUUCACAUGUUGUGAUUUGAUCCAAUUAGCUCCAGACUCAUUCACUCACUUACCGAGUCACUAAAACAGGAAUGAACUCGUUACAUGAGUAAAUGAUGCGGGAGACUUAUUGGAUCUUAGAUUCAUUGCGAUUGGACUGAAGGGAACUCCCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009146011.1 |
|
3.0 | PREDICTED: Brassica rapa transcription factor TCP10 (LOC103867916), transcript variant X2, mRNA | transcription factor TCP10(LOC103867916) | coding protein | psRNATarget | |||||||||
| XM_009146010.2 |
|
3.0 | PREDICTED: Brassica rapa transcription factor TCP10 (LOC103867916), transcript variant X1, mRNA | transcription factor TCP10(LOC103867916) | coding protein | psRNATarget |