| ncRNA ID | novel_bra_miR69 |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | ChrA1:26756665-26756814 [+] |
| Reference genome | Brapa_1.0 |
| Source | SRR1485286;SRR1592475;SRR1592477;SRR1592478;SRR1776796;SRR1776877;SRR1776880;SRR1776889;SRR1776899;SRR1777714;SRR2912891;SRR2912893 |
| Length | 19 |
| Mature sequence(if miRNA) | 132 - GGCAGUCUCCUUGGCUAUU - 150 |
| Stem-loop(if miRNA) |
-- U U CUCUU C UC -U UUUAAGU GG A AUU UAGCCAAGGA GACU GCCUG UUU ACC CA GAUUCAAU UGAU UUUUGGAUUA UAUGC G |||||||||| |||| ||||| ||| ||| || |||||||| |||| |||||||||| ||||| A AUCGGUUCCU CUGA CGGAC AGA UGG GU CUAAGUUA ACUA AAAACUUAAU AUAUG U UU - - --UUU U GU UU ------U -- A AAG |
| Stem-loop sequence | UAGCCAAGGAUGACUUGCCUGCUCUUUUUCACCUCCAUGAUUCAAUUUUAAGUUGAUGGUUUUGGAUUAAUAUGCAUUGAUGAAGUAUAAUAAUUCAAAAAUCAUAUUGAAUCUUUGUGGGUUAGAUUUCAGGCAGUCUCCUUGGCUAUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009147408.2 |
|
2.5 | PREDICTED: Brassica rapa pumilio homolog 5 (LOC103869342), transcript variant X2, mRNA | pumilio homolog 5(LOC103869342) | coding protein | psRNATarget | |||||||||
| XM_009147407.2 |
|
2.5 | PREDICTED: Brassica rapa pumilio homolog 5 (LOC103869342), transcript variant X1, mRNA | pumilio homolog 5(LOC103869342) | coding protein | psRNATarget |