Search result

BaseInfo

ncRNA ID ath-miRf10718-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UACUCGACCCAGGUGGUCGAGU - NA
Stem-loop(if miRNA)   G          AGG           UG   --------------   G GACAAGUCGGAGUCUUCUUCUCUUUCUCAU
CG UACUCGACCC   UGGUCGAGUAG  GGU              CGA U                              G
|| ||||||||||   |||||||||||  |||              ||| |
GU GUGAGCUGGG   ACCAGCUCAUC  UCG              AAG A                              C
  G          -GG           UU   UAGUAGCGAAAUCU   - AGAGCUAAGGCGUGAGUUGGUCUGUAAGCU
Stem-loop sequence CGGUACUCGACCCAGGUGGUCGAGUAGUGGGUCGAGUGACAAGUCGGAGUCUUCUUCUCUUUCUCAUGCUCGAAUGUCUGGUUGAGUGCGGAAUCGAGAAGAAUCUAAAGCGAUGAUGCUUUCUACUCGACCAGGGGGUCGAGUGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT012022.1
ncRNA:22   UGAGCUGGUGGACCCAGCUCAU   1
  ||||||||||||||||||||||
targets:210   ACUCGACCACCUGGGUCGAGUA   231

0.0 Arabidopsis thaliana At2g10890 mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:22   UGAGCUGGUGGACCCAGCUCAU   1
  ||||||||||||||||||||||
targets:852   ACUCGACCACCUGGGUCGAGUA   873

0.0 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:22   UGAGCUGGUGGACCCAGCUCAU   1
  ||||||||||||||||||||||
targets:1179   ACUCGACCACCUGGGUCGAGUA   1200

0.0 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:22   UGAGCUGGUGGACCCAGCUCAU   1
  ||||||||||||||||||||||
targets:1227   ACUCGACCACCUGGGUCGAGUA   1248

0.0 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:22   UGAGCUGGUGGACCCAGCUCAU   1
  |||||||||||||||||||||=
targets:832   ACUCGACCACCUGGGUCGAGUG   853

1.0 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
AY227642.1
ncRNA:22   UGAGCUGGUGGACCCAGCUCAU   1
  ||||||||||*|||||||||||
targets:1072   ACUCGACCACGUGGGUCGAGUA   1093

1.5 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget