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BaseInfo

ncRNA ID	novel_bra_miR64
Species	Brassica rapa
Class	miRNA
Genome position	ChrA1:9651930-9652031 [-]
Reference genome	Brapa_1.0
Source	SRR1160826
Length	22
Mature sequence(if miRNA)	1 - UUUCAUCUUAGAGAAUGUUGUU - 22
Stem-loop(if miRNA)	--     G    -                  G     U  ---AA C    UC   CAACA UCUC AGGAUGGAAAAUGCUUUU ACUUA GU     C GUGA  A   ||||| |||| |||||||||||||||||| ||||| ||     | ||||  A   GUUGU AGAG UUCUACUUUUUAUGAAAA UGAAU CA     G CGCU  A UU     A    A                  A     -  AAACC A    CU
Stem-loop sequence	CAACAGUCUCAGGAUGGAAAAUGCUUUUGACUUAUGUAACCGUGAUCAAAUCUCGCAGCCAAAACUAAGUAAAAAGUAUUUUUCAUCUUAGAGAAUGUUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009138557.1	ncRNA:22   UUGUUGUAAGAGAUUCUACUUU   1   ===||||||||||*|||||||= targets:1320   GGUAACAUUCUCUUAGAUGAAG   1341 Target Full Sequence	2.5	PREDICTED: Brassica rapa cysteine-rich receptor-like protein kinase 24 (LOC103860870), transcript variant X2, mRNA	cysteine-rich receptor-like protein kinase 24(LOC103860870)	coding protein	psRNATarget
XM_009138549.1	ncRNA:22   UUGUUGUAAGAGAUUCUACUUU   1   ===||||||||||*|||||||= targets:1408   GGUAACAUUCUCUUAGAUGAAG   1429 Target Full Sequence	2.5	PREDICTED: Brassica rapa cysteine-rich receptor-like protein kinase 24 (LOC103860870), transcript variant X1, mRNA	cysteine-rich receptor-like protein kinase 24(LOC103860870)	coding protein	psRNATarget
XM_009134782.1	ncRNA:22   UUGUUGUAAGAGAUUCUACUUU   1   ||*|||||*|||||*||||||| targets:1094   AAAAACAUACUCUAUGAUGAAA   1115 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103857574 (LOC103857574), mRNA	uncharacterized LOC103857574(LOC103857574)	coding protein	psRNATarget