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BaseInfo

ncRNA ID	novel_bra_miR59
Species	Brassica rapa
Class	miRNA
Genome position	ChrA7:18564981-18565061 [+]
Reference genome	Brapa_1.0
Source	SRR1485286;SRR1485289;SRR1592475;SRR1592476;SRR1161445;SRR1592478;SRR1776880;SRR1776889;SRR2912893;SRR2912894;SRR1160826
Length	21
Mature sequence(if miRNA)	61 - CUGAAGUGUUUGGGGGGACUC - 81
Stem-loop(if miRNA)	--       G          U         C  A   GUU   GUUCCCU AAACGCUUCA UGUUCAUUA GU GAU   U   ||||||| |||||||||| ||||||||| || |||   A   CAGGGGG UUUGUGAAGU ACAAGUAAU UA CUA   G CU       G          C         C  A   AAU
Stem-loop sequence	GUUCCCUGAAACGCUUCAUUGUUCAUUACGUAGAUGUUUAGUAAAUCAAUCUAAUGAACACUGAAGUGUUUGGGGGGACUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009142693.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||*||=||||||||||||| targets:1096   GAGUGCCUCCAAACACUUCAG   1116 Target Full Sequence	2.0	PREDICTED: Brassica rapa uncharacterized LOC103864919 (LOC103864919), mRNA	uncharacterized LOC103864919(LOC103864919)	coding protein	psRNATarget
XM_009103518.1	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   ||||=||=||||||||||||* targets:399   GAGUUCCUCCAAACACUUCAU   419 Target Full Sequence	3.0	PREDICTED: Brassica rapa ATP sulfurylase 4, chloroplastic (LOC103827954), mRNA	ATP sulfurylase 4, chloroplastic(LOC103827954)	coding protein	psRNATarget
XM_009123832.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:139   AAGUUCUCCCAAACACUUCAA   159 Target Full Sequence	3.0	PREDICTED: Brassica rapa sulfate transporter 2.1-like (LOC103846830), transcript variant X2, mRNA	sulfate transporter 2.1-like(LOC103846830)	coding protein	psRNATarget
XM_009127072.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:124   AAGUUCUCCCAAACACUUCAA   144 Target Full Sequence	3.0	PREDICTED: Brassica rapa sulfate transporter 2.1 (LOC103850335), mRNA	sulfate transporter 2.1(LOC103850335)	coding protein	psRNATarget
XM_009123831.2	ncRNA:21   CUCAGGGGGGUUUGUGAAGUC   1   *|||=|=|||||||||||||* targets:139   AAGUUCUCCCAAACACUUCAA   159 Target Full Sequence	3.0	PREDICTED: Brassica rapa sulfate transporter 2.1-like (LOC103846830), transcript variant X1, mRNA	sulfate transporter 2.1-like(LOC103846830)	coding protein	psRNATarget