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BaseInfo

ncRNA ID novel_bra_miR57
Species Brassica rapa
Class miRNA
Genome position ChrA7:10734274-10734369 [+]
Reference genome Brapa_1.0
Source SRR1485286
Length 24
Mature sequence(if miRNA) 73 - AUUGAGAUAUAUAGCUGUAGACUA - 96
Stem-loop(if miRNA) --C        --       UG   ---------UU      AUUUUUUUGCU
   UUUACAGU  UAUAUUU  AUU           GCAGAG           G
   ||||||||  |||||||  |||           ||||||           U
   AGAUGUCG  AUAUAGA  UAG           CGAAAG           G
AUC        AU       GU   UUAGUUCGAAA      GAAUUUUUUGA
Stem-loop sequence CUUUACAGUUAUAUUUUGAUUUUGCAGAGAUUUUUUUGCUGUGAGUUUUUUAAGGAAAGCAAAGCUUGAUUGAUUGAGAUAUAUAGCUGUAGACUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009138362.2
ncRNA:24   AUCAGAUGUCGAUAUAUAGAGUUA   1
  *|||=||=|**|||||||||||||
targets:1365   GAGUUUAUAUAUAUAUAUCUCAAU   1388

3.0 PREDICTED: Brassica rapa protein POLLENLESS 3-LIKE 2-like (LOC103860703), mRNA protein POLLENLESS 3-LIKE 2-like(LOC103860703) coding protein psRNATarget