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BaseInfo

ncRNA ID	novel_bra_miR55
Species	Brassica rapa
Class	miRNA
Genome position	ChrA6:8649704-8649858 [+]
Reference genome	Brapa_1.0
Source	SRR1485286
Length	21
Mature sequence(if miRNA)	1 - AAUGUUCCAAUGUAUGCCUCU - 21
Stem-loop(if miRNA)	--       C        C         AGA               -   A       -----------UAC    UG      C   AAUGUUC AAUGUAUG CUCUAUAAU   AGAGUUCCUCUAUUU UAG GGAAAAU              UUUU  CUUCUA A   ||||||| |||||||| |||||||||   ||||||||||||||| ||| |||||||              ||||  ||||||   UUACGAG UUACAUAC GAGGUAUUA   UCUCAAGGAGAUAAA AUC CCUUUUA              AAAA  GGAGAU U UU       A        A         ---               U   C       UAUCUUUAUACGAU    GU      U
Stem-loop sequence	AAUGUUCCAAUGUAUGCCUCUAUAAUAGAAGAGUUCCUCUAUUUUAGAGGAAAAUUACUUUUUGCUUCUACAUUUAGAGGUGAAAAUAGCAUAUUUCUAUAUUUUCCCCUAUAAAUAGAGGAACUCUAUUAUGGAGACAUACAUUAGAGCAUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009104398.1	ncRNA:21   UCUCCGUAUGUAACCUUGUAA   1   =|||||*||||*||||||||| targets:1743   GGAGGCCUACAAUGGAACAUU   1763 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103828764 (LOC103828764), transcript variant X2, mRNA	uncharacterized LOC103828764(LOC103828764)	coding protein	psRNATarget
XM_009104399.1	ncRNA:21   UCUCCGUAUGUAACCUUGUAA   1   =|||||*||||*||||||||| targets:1752   GGAGGCCUACAAUGGAACAUU   1772 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103828764 (LOC103828764), transcript variant X3, mRNA	uncharacterized LOC103828764(LOC103828764)	coding protein	psRNATarget
XM_009104397.1	ncRNA:21   UCUCCGUAUGUAACCUUGUAA   1   =|||||*||||*||||||||| targets:1752   GGAGGCCUACAAUGGAACAUU   1772 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103828764 (LOC103828764), transcript variant X1, mRNA	uncharacterized LOC103828764(LOC103828764)	coding protein	psRNATarget