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BaseInfo

ncRNA ID novel_bra_miR49
Species Brassica rapa
Class miRNA
Genome position ChrA10:7001498-7001669 [+]
Reference genome Brapa_1.0
Source SRR1485285
Length 24
Mature sequence(if miRNA) 1 - AGAGAAAUAUAGAACAAAAACAUU - 24
Stem-loop(if miRNA) --         U        AAC             GAUCC  C   --U         GAAAACAAGAAGA  GAAUAGGAAAUGAACGUA
  AGAGAAAUA AGAACAAA   AUUUUUUGUUAAG     GA UGG   GACCAUUCU             AC                  G
  ||||||||| ||||||||   |||||||||||||     || |||   |||||||||             ||
  UCUCUUUAU UCUUGUUU   UAAGGAACAAUUU     CU ACC   UUGGUAAGG             GU                  A
CA         U        AAU             AUACC  -   UUG         ---------AAAA  AAGGACGUUAAGAUAAGG
Stem-loop sequence AGAGAAAUAUAGAACAAAAACAUUUUUUGUUAAGGAUCCGACUGGUGACCAUUCUGAAAACAAGAAGAACGAAUAGGAAAUGAACGUAGAGGAAUAGAAUUGCAGGAAUGAAAAGGAAUGGUUGUUCCAUCCCAUAUUUAACAAGGAAUUAAUUUGUUCUUUAUUUCUCUAC