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BaseInfo

ncRNA ID	novel_bra_miR47
Species	Brassica rapa
Class	miRNA
Genome position	ChrA5:779977-780171 [-]
Reference genome	Brapa_1.0
Source	SRR1485285;SRR1485286;SRR1161445;SRR2912891;SRR2912893;SRR1485263;SRR1125021;SRR1485278;SRR1485280;SRR1485281;SRR1485283;SRR1485284
Length	20
Mature sequence(if miRNA)	1 - UUUGGAUUGAAGGGAGCUCC - 20
Stem-loop(if miRNA)	--           U  A            CA   UUUA    A   -----------    -C    A      UU UU    G UU    -CAUU        GA   AGCUCCCUUCG UC AAACGAGGAGGA  AGA    AGGA AUA           AAAG  AGAA AUCUAA  G  CAUG A  CCCU     AAGUGCUU  A   ||||||||||| || ||||||||||||  |||    |||| |||           ||||  |||| ||||||  |  |||| |  ||||     ||||||||  U   UCGAGGGAAGU AG UUUGCUUCUCUU  UCU    UCCU UAU           UUUC  UCUU UAGAUU  C  GUAC U  GGGG     UUCACGAG  A CC           U  G            -C   ----    A   AUAUGCAUCUC    UC    C      CU CG    G UU    UCAUU        UA
Stem-loop sequence	AGCUCCCUUCGUUCAAAACGAGGAGGACAAGAUUUAAGGAAAUAAAAGCAGAAAAUCUAAUUGUUCAUGGAUUCCCUCAUUAAGUGCUUGAAUAAUGAGCACUUUUACUGGGGUUUGCAUGGCCUCUUAGAUCUUCUCUCUUUCUCUACGUAUAUAUAUCCUUCUCUUCUCUUCGUUUGGAUUGAAGGGAGCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009128793.2	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   *|||||||||||||*||||| targets:1110   AGAGCUCCCUUCAAACCAAA   1129 Target Full Sequence	1.5	PREDICTED: Brassica rapa transcription factor MYB28-like (LOC103851911), mRNA	transcription factor MYB28-like(LOC103851911)	coding protein	psRNATarget
XM_009134603.2	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   *|||||=||||||=|||||| targets:1146   AGAGCUUCCUUCAGUCCAAA   1165 Target Full Sequence	2.5	PREDICTED: Brassica rapa myb-related protein 306 (LOC103857427), mRNA	myb-related protein 306(LOC103857427)	coding protein	psRNATarget
XM_018653318.1	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   |||||||||||||*|||||* targets:805   GGAGCUCCCUUCAUUCCAAU   824 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB104 (LOC103829641), mRNA	NA	coding protein	psRNATarget
XM_009122890.1	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   |||||||||||||*|||||* targets:1111   GGAGCUCCCUUCAUUCCAAU   1130 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB-like (LOC103845973), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC103845973)	coding protein	psRNATarget
XM_009122888.1	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   |||||||||||||*|||||* targets:1111   GGAGCUCCCUUCAUUCCAAU   1130 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB-like (LOC103845973), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC103845973)	coding protein	psRNATarget
XM_018655732.1	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   |||||||||||||*|||||* targets:1119   GGAGCUCCCUUCAUUCCAAU   1138 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB-like (LOC103845973), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009148477.2	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   |||||||||||||*|||||* targets:1139   GGAGCUCCCUUCAUUCCAAU   1158 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB (LOC103870347), transcript variant X3, mRNA	transcription factor GAMYB(LOC103870347)	coding protein	psRNATarget
XM_009148476.2	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   |||||||||||||*|||||* targets:1138   GGAGCUCCCUUCAUUCCAAU   1157 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB (LOC103870347), transcript variant X1, mRNA	transcription factor GAMYB(LOC103870347)	coding protein	psRNATarget
XM_009135672.2	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   |||||||||||||*|||||* targets:1320   GGAGCUCCCUUCAUUCCAAU   1339 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB104-like (LOC103858339), transcript variant X1, mRNA	transcription factor MYB104-like(LOC103858339)	coding protein	psRNATarget
XM_018657195.1	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   |||||||||||||*|||||* targets:1554   GGAGCUCCCUUCAUUCCAAU   1573 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB104-like (LOC103858339), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018659244.1	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   |||||||||||||*|||||* targets:1579   GGAGCUCCCUUCAUUCCAAU   1598 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor GAMYB (LOC103870347), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_009121778.2	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   *|||=|||||||||*||||| targets:1161   AGAGUUCCCUUCAAACCAAA   1180 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB26-like (LOC103844949), mRNA	transcription factor MYB26-like(LOC103844949)	coding protein	psRNATarget
XM_009151997.2	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   |*|||||||*|||||||||| targets:509   GAAGCUCCCCUCAAUCCAAA   528 Target Full Sequence	2.5	PREDICTED: Brassica rapa actin-12 (LOC103873596), mRNA	actin-12(LOC103873596)	coding protein	psRNATarget
XM_009134721.1	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   *||||*||||||||*||||| targets:659   AGAGCCCCCUUCAAACCAAA   678 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein SPEAR2 (LOC103857517), transcript variant X3, mRNA	protein SPEAR2(LOC103857517)	coding protein	psRNATarget
XM_009134720.1	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   *||||*||||||||*||||| targets:659   AGAGCCCCCUUCAAACCAAA   678 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein SPEAR2 (LOC103857517), transcript variant X2, mRNA	protein SPEAR2(LOC103857517)	coding protein	psRNATarget
XM_009134719.1	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   *||||*||||||||*||||| targets:659   AGAGCCCCCUUCAAACCAAA   678 Target Full Sequence	2.5	PREDICTED: Brassica rapa protein SPEAR2 (LOC103857517), transcript variant X1, mRNA	protein SPEAR2(LOC103857517)	coding protein	psRNATarget
XM_009134163.2	ncRNA:20   CCUCGAGGGAAGUUAGGUUU   1   *||*||||||||||*||||| targets:1140   AGACCUCCCUUCAAACCAAA   1159 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor MYB26 (LOC103857012), mRNA	transcription factor MYB26(LOC103857012)	coding protein	psRNATarget