ncRNA ID | novel_bra_miR46 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA5:4361542-4361745 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1485285;SRR1485258;SRR1485261;SRR1485283 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAGAACCCCGGAUUAAUCAUACUC - 24 |
Stem-loop(if miRNA) |
--UC            A         A   -  A                     U     C                            C          GU     AUGAUUAAUCCG GGUUCUUAG AUG GG UUCUUAGCAGAAGUUAAGAAA UGUUU UUAACUUUUAACUAAAAAAGCUAAGAAU GGUUCUUAAA  C     |||||||||||| ||||||||| ||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||     UACUAAUUAGGC CCAAGAAUC UAC CC AAGAAUCGUCUUCAAUUUUUU AUAAA AAUUGAAAAUUGAUUUUUUUGAUUUUUG CCAAGAAUUU  C CUCA            C         C   A  -                     U     A                            A          AU |
Stem-loop sequence | UCAUGAUUAAUCCGAGGUUCUUAGAAUGGGAUUCUUAGCAGAAGUUAAGAAAUUGUUUCUUAACUUUUAACUAAAAAAGCUAAGAAUCGGUUCUUAAAGUCCUAUUUAAGAACCAGUUUUUAGUUUUUUUAGUUAAAAGUUAAAAAAUAUUUUUUUAACUUCUGCUAAGAACCACAUCCUAAGAACCCCGGAUUAAUCAUACUC |