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BaseInfo

ncRNA ID novel_bra_miR46
Species Brassica rapa
Class miRNA
Genome position ChrA5:4361542-4361745 [-]
Reference genome Brapa_1.0
Source SRR1485285;SRR1485258;SRR1485261;SRR1485283
Length 24
Mature sequence(if miRNA) 1 - AAGAACCCCGGAUUAAUCAUACUC - 24
Stem-loop(if miRNA) --UC            A         A   -  A                     U     C                            C          GU
    AUGAUUAAUCCG GGUUCUUAG AUG GG UUCUUAGCAGAAGUUAAGAAA UGUUU UUAACUUUUAACUAAAAAAGCUAAGAAU GGUUCUUAAA  C
    |||||||||||| ||||||||| ||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||
    UACUAAUUAGGC CCAAGAAUC UAC CC AAGAAUCGUCUUCAAUUUUUU AUAAA AAUUGAAAAUUGAUUUUUUUGAUUUUUG CCAAGAAUUU  C
CUCA            C         C   A  -                     U     A                            A          AU
Stem-loop sequence UCAUGAUUAAUCCGAGGUUCUUAGAAUGGGAUUCUUAGCAGAAGUUAAGAAAUUGUUUCUUAACUUUUAACUAAAAAAGCUAAGAAUCGGUUCUUAAAGUCCUAUUUAAGAACCAGUUUUUAGUUUUUUUAGUUAAAAGUUAAAAAAUAUUUUUUUAACUUCUGCUAAGAACCACAUCCUAAGAACCCCGGAUUAAUCAUACUC