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BaseInfo

ncRNA ID	novel_bra_miR41
Species	Brassica rapa
Class	miRNA
Genome position	ChrA10:4524273-4524388 [-]
Reference genome	Brapa_1.0
Source	SRR1485285;SRR1485286;SRR1485288;SRR1485289;SRR1592475;SRR1592476;SRR1592477;SRR1592478;SRR1776796;SRR1776877;SRR1161445;SRR1776880;SRR1776889;SRR1485258;SRR1776899;SRR1777714;SRR2912891;SRR1485259;SRR2912893;SRR1485261;SRR1485263;SRR1485264;SRR1485265;SRR1485266;SRR1485267;SRR1485268;SRR1485269;SRR1485270;SRR1485271;SRR1485272;SRR1485273;SRR1485274;SRR1485275;SRR1485276;SRR1485278;SRR1485279;SRR1160826;SRR1485280;SRR1485281;SRR1485282;SRR1485283;SRR1485284
Length	21
Mature sequence(if miRNA)	1 - UCGGACCAGGCUUCAUCCCCC - 21
Stem-loop(if miRNA)	--  A   UU      A         UUA        CAAAUAUGUA        -    UAU   GG AUG  GUCUGG UCGAGGAUA   UAUAUACA          UAUAUAUG UUAA   C   || |||  |||||| |||||||||   ||||||||          |||||||| ||||   A   CC UAC  CGGACC GGCUCUUAU   AUAUAUGU          AUAUAUAC AGUU   G CC  C   UU      A         UAG        ----------        U    UGU
Stem-loop sequence	GGAAUGUUGUCUGGAUCGAGGAUAUUAUAUAUACACAAAUAUGUAUAUAUAUGUUAAUAUCAGUGUUUGAUCAUAUAUAUGUAUAUAGAUUAUUCUCGGACCAGGCUUCAUCCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009127057.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:863   CUGGGAUGAAGCCUGGUCCGG   883 Target Full Sequence	1.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-8 (LOC103850318), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-8(LOC103850318)	coding protein	psRNATarget
XM_009127051.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:932   CUGGGAUGAAGCCUGGUCCGG   952 Target Full Sequence	1.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-8 (LOC103850318), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-8(LOC103850318)	coding protein	psRNATarget
XM_009116891.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:874   UUGGGAUGAAGCCUGGUCCGG   894 Target Full Sequence	1.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-9 (LOC103840390), mRNA	homeobox-leucine zipper protein ATHB-9(LOC103840390)	coding protein	psRNATarget
XM_009143148.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:889   UUGGGAUGAAGCCUGGUCCGG   909 Target Full Sequence	1.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-14 (LOC103865350), mRNA	homeobox-leucine zipper protein ATHB-14(LOC103865350)	coding protein	psRNATarget
XM_009110576.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:970   CUGGGAUGAAGCCUGGUCCGG   990 Target Full Sequence	1.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-8-like (LOC103834507), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC103834507)	coding protein	psRNATarget
XM_009122358.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1014   CUGGGAUGAAGCCUGGUCCGG   1034 Target Full Sequence	1.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein REVOLUTA (LOC103845484), transcript variant X2, mRNA	homeobox-leucine zipper protein REVOLUTA(LOC103845484)	coding protein	psRNATarget
XM_009122357.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1044   CUGGGAUGAAGCCUGGUCCGG   1064 Target Full Sequence	1.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein REVOLUTA (LOC103845484), transcript variant X1, mRNA	homeobox-leucine zipper protein REVOLUTA(LOC103845484)	coding protein	psRNATarget
XM_009128340.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1273   CCGGGAUGAAGCCUGGUCCGG   1293 Target Full Sequence	1.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein REVOLUTA-like (LOC103851488), mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC103851488)	coding protein	psRNATarget
XM_009151840.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:420   CUGGUAUGAAGCCUGGUCCGG   440 Target Full Sequence	2.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein REVOLUTA-like (LOC103873430), transcript variant X2, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC103873430)	coding protein	psRNATarget
XM_009108900.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:947   CUGGAAUGAAGCCUGGUCCGG   967 Target Full Sequence	2.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-15-like (LOC103832807), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC103832807)	coding protein	psRNATarget
XM_009108899.1	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:948   CUGGAAUGAAGCCUGGUCCGG   968 Target Full Sequence	2.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-15-like (LOC103832807), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC103832807)	coding protein	psRNATarget
XM_009145499.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:991   UUGGUAUGAAGCCUGGUCCGG   1011 Target Full Sequence	2.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-14 (LOC103867425), mRNA	homeobox-leucine zipper protein ATHB-14(LOC103867425)	coding protein	psRNATarget
XM_009151839.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1051   CUGGUAUGAAGCCUGGUCCGG   1071 Target Full Sequence	2.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein REVOLUTA-like (LOC103873430), transcript variant X1, mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC103873430)	coding protein	psRNATarget
XM_009149461.2	ncRNA:21   CCCCCUACUUCGGACCAGGCU   1   **||*|||||||||||||||= targets:1172   CUGGAAUGAAGCCUGGUCCGG   1192 Target Full Sequence	2.0	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-15 (LOC103871234), mRNA	homeobox-leucine zipper protein ATHB-15(LOC103871234)	coding protein	psRNATarget