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BaseInfo

ncRNA ID	novel_bra_miR37
Species	Brassica rapa
Class	miRNA
Genome position	ChrA10:8710043-8710200 [-]
Reference genome	Brapa_1.0
Source	SRR1485285
Length	21
Mature sequence(if miRNA)	138 - UCAUAAACCCUAAACCCUUGG - 158
Stem-loop(if miRNA)	---------UCA            CCU   GUAAACCAUUGGAUAAAUCAUAAAGUCUAAAUCAAAAUACUAAACCCUAAACC             UAAACCCUAAAC   UGG                                                     C             ||||||||||||   |||             AUUUGGGAUUUG   AAC                                                     U UUAGUAUUAGAA            -AG   CUACUUAGGAUGAGAUUUAGUUUUUAUGAUUUUGUAAGUCCUUAAAUCCUAAU
Stem-loop sequence	UCAUAAACCCUAAACCCUUGGGUAAACCAUUGGAUAAAUCAUAAAGUCUAAAUCAAAAUACUAAACCCUAAACCCUUAAUCCUAAAUUCCUGAAUGUUUUAGUAUUUUUGAUUUAGAGUAGGAUUCAUCCAAGAGUUUAGGGUUUAAAGAUUAUGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009144628.2	ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1   ||*|||||||||||||||||= targets:199   CCUAGGGUUUAGGGUUUAUGG   219 Target Full Sequence	2.0	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At4g26800 (LOC103866658), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At4g26800(LOC103866658)	coding protein	psRNATarget
XM_009144620.2	ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1   ||*|||||||||||||||||= targets:199   CCUAGGGUUUAGGGUUUAUGG   219 Target Full Sequence	2.0	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At4g26800 (LOC103866658), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At4g26800(LOC103866658)	coding protein	psRNATarget
XM_009103328.2	ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1   =*||||*||||||||||=||| targets:664   UGAAGGAUUUAGGGUUUGUGA   684 Target Full Sequence	2.5	PREDICTED: Brassica rapa CTD nuclear envelope phosphatase 1 (LOC103827781), mRNA	CTD nuclear envelope phosphatase 1(LOC103827781)	coding protein	psRNATarget
DQ296182.1	ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1   *|*|||||||||||||||*|| targets:1001   ACUAGGGUUUAGGGUUUAAGA   1021 Target Full Sequence	2.5	Brassica rapa clone 295 unknown mRNA	NA	coding protein	psRNATarget
XM_009152613.2	ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1   *|*|||||||||||||||*|| targets:1030   ACUAGGGUUUAGGGUUUAAGA   1050 Target Full Sequence	2.5	PREDICTED: Brassica rapa transcription factor TCP7-like (LOC103874198), mRNA	transcription factor TCP7-like(LOC103874198)	coding protein	psRNATarget
XM_009146744.2	ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1   =||=**||||||||||||||| targets:372   UCAGAUGUUUAGGGUUUAUGA   392 Target Full Sequence	3.0	PREDICTED: Brassica rapa aspartyl protease APCB1 (LOC103868663), mRNA	aspartyl protease APCB1(LOC103868663)	coding protein	psRNATarget
XM_018656798.1	ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1   =||=*||*||||||||||||| targets:1067   UCAGCGGCUUAGGGUUUAUGA   1087 Target Full Sequence	3.0	PREDICTED: Brassica rapa probable xyloglucan endotransglucosylase/hydrolase protein 27 (LOC103854033), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_009130940.2	ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1   =||=*||*||||||||||||| targets:1067   UCAGCGGCUUAGGGUUUAUGA   1087 Target Full Sequence	3.0	PREDICTED: Brassica rapa probable xyloglucan endotransglucosylase/hydrolase protein 27 (LOC103854033), transcript variant X4, mRNA	probable xyloglucan endotransglucosylase/hydrolase protein 27(LOC103854033)	coding protein	psRNATarget
XM_018656797.1	ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1   =||=*||*||||||||||||| targets:1067   UCAGCGGCUUAGGGUUUAUGA   1087 Target Full Sequence	3.0	PREDICTED: Brassica rapa probable xyloglucan endotransglucosylase/hydrolase protein 27 (LOC103854033), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018656796.1	ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1   =||=*||*||||||||||||| targets:1067   UCAGCGGCUUAGGGUUUAUGA   1087 Target Full Sequence	3.0	PREDICTED: Brassica rapa probable xyloglucan endotransglucosylase/hydrolase protein 27 (LOC103854033), transcript variant X1, mRNA	NA	coding protein	psRNATarget