ncRNA ID | novel_bra_miR30 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA10:16671082-16671264 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485285;SRR1485265;SRR1485266;SRR1485267 |
Length | 21 |
Mature sequence(if miRNA) | 163 - UGAACGGACAUGGGAGGCCCA - 183 |
Stem-loop(if miRNA) |
--         C            A           U  C    U A     -----U                 A   G             UU   GGCCUCCUA GUCCGUUUACUC GCCUGUGGGCC CA UUCG G GACGG      CAGUGUGUUAAUUUUCC AAG CUCGAAAGUCGUG  U   ||||||||| |||||||||||| ||||||||||| || |||| | |||||      ||||||||||||||||| ||| |||||||||||||  A   CCGGAGGGU CAGGCAAGUGAG CGGGCACCCGG GU AAGC C CUGCC      GUCACGUAAUUAAAAGG UUC GAGCUUUCAGUAU  C AC         A            -           -  A    - G     CACCAC                 C   A             GU |
Stem-loop sequence | GGCCUCCUACGUCCGUUUACUCAGCCUGUGGGCCUCACUUCGUGAGACGGUCAGUGUGUUAAUUUUCCAAAGGCUCGAAAGUCGUGUUUACUGUAUGACUUUCGAGACUUCGGAAAAUUAAUGCACUGCACCACCCGUCGCCGAAAUGGGCCCACGGGCGAGUGAACGGACAUGGGAGGCCCA |