Search result

BaseInfo

ncRNA ID novel_bra_miR30
Species Brassica rapa
Class miRNA
Genome position ChrA10:16671082-16671264 [+]
Reference genome Brapa_1.0
Source SRR1485285;SRR1485265;SRR1485266;SRR1485267
Length 21
Mature sequence(if miRNA) 163 - UGAACGGACAUGGGAGGCCCA - 183
Stem-loop(if miRNA) --         C            A           U  C    U A     -----U                 A   G             UU
  GGCCUCCUA GUCCGUUUACUC GCCUGUGGGCC CA UUCG G GACGG      CAGUGUGUUAAUUUUCC AAG CUCGAAAGUCGUG  U
  ||||||||| |||||||||||| ||||||||||| || |||| | |||||      ||||||||||||||||| ||| |||||||||||||  A
  CCGGAGGGU CAGGCAAGUGAG CGGGCACCCGG GU AAGC C CUGCC      GUCACGUAAUUAAAAGG UUC GAGCUUUCAGUAU  C
AC         A            -           -  A    - G     CACCAC                 C   A             GU
Stem-loop sequence GGCCUCCUACGUCCGUUUACUCAGCCUGUGGGCCUCACUUCGUGAGACGGUCAGUGUGUUAAUUUUCCAAAGGCUCGAAAGUCGUGUUUACUGUAUGACUUUCGAGACUUCGGAAAAUUAAUGCACUGCACCACCCGUCGCCGAAAUGGGCCCACGGGCGAGUGAACGGACAUGGGAGGCCCA