Search result

BaseInfo

ncRNA ID novel_bra_miR24
Species Brassica rapa
Class miRNA
Genome position ChrA9:29989757-29989943 [+]
Reference genome Brapa_1.0
Source SRR1485285
Length 21
Mature sequence(if miRNA) 1 - UCAUAAACCCUAAACCCUUGG - 21
Stem-loop(if miRNA) --  A            CC               A    A         C      C    ---AU                 --A        AA
  UC UAAACCCUAAAC  UUGGGUAAACCCUGA CUCU GGAUAAAUC UAAACU UAGG     AAAUCCUAAACUCUAGG   UAAAUCCU  C
  || ||||||||||||  ||||||||||||||| |||| ||||||||| |||||| ||||     |||||||||||||||||   ||||||||
  AG AUUUGGGAUUUG  AACUCAUUUGGGAUU GGGA CCUAUUUAG AUUUGA AUUU     UUUGGGAUUUGGGAUUU   AUUUAGGA  U
UU  G            AA               G    A         U      A    GUGAU                 AGG        AC
Stem-loop sequence UCAUAAACCCUAAACCCUUGGGUAAACCCUGAACUCUAGGAUAAAUCCUAAACUCUAGGAUAAAUCCUAAACUCUAGGAUAAAUCCUAACUCAAGGAUUUAGGAUUUAGGGUUUAGGGUUUUAGUGUUUAAAGUUUAUGAUUUAUCCAAGGGGUUAGGGUUUACUCAAAAGUUUAGGGUUUAGGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009144628.2
ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1
  ||*|||||||||||||||||=
targets:199   CCUAGGGUUUAGGGUUUAUGG   219

2.0 PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At4g26800 (LOC103866658), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At4g26800(LOC103866658) coding protein psRNATarget
XM_009144620.2
ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1
  ||*|||||||||||||||||=
targets:199   CCUAGGGUUUAGGGUUUAUGG   219

2.0 PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At4g26800 (LOC103866658), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At4g26800(LOC103866658) coding protein psRNATarget
XM_009103328.2
ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1
  =*||||*||||||||||=|||
targets:664   UGAAGGAUUUAGGGUUUGUGA   684

2.5 PREDICTED: Brassica rapa CTD nuclear envelope phosphatase 1 (LOC103827781), mRNA CTD nuclear envelope phosphatase 1(LOC103827781) coding protein psRNATarget
DQ296182.1
ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1
  *|*|||||||||||||||*||
targets:1001   ACUAGGGUUUAGGGUUUAAGA   1021

2.5 Brassica rapa clone 295 unknown mRNA NA coding protein psRNATarget
XM_009152613.2
ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1
  *|*|||||||||||||||*||
targets:1030   ACUAGGGUUUAGGGUUUAAGA   1050

2.5 PREDICTED: Brassica rapa transcription factor TCP7-like (LOC103874198), mRNA transcription factor TCP7-like(LOC103874198) coding protein psRNATarget
XM_009146744.2
ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1
  =||=**|||||||||||||||
targets:372   UCAGAUGUUUAGGGUUUAUGA   392

3.0 PREDICTED: Brassica rapa aspartyl protease APCB1 (LOC103868663), mRNA aspartyl protease APCB1(LOC103868663) coding protein psRNATarget
XM_018656798.1
ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1
  =||=*||*|||||||||||||
targets:1067   UCAGCGGCUUAGGGUUUAUGA   1087

3.0 PREDICTED: Brassica rapa probable xyloglucan endotransglucosylase/hydrolase protein 27 (LOC103854033), transcript variant X3, mRNA NA coding protein psRNATarget
XM_009130940.2
ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1
  =||=*||*|||||||||||||
targets:1067   UCAGCGGCUUAGGGUUUAUGA   1087

3.0 PREDICTED: Brassica rapa probable xyloglucan endotransglucosylase/hydrolase protein 27 (LOC103854033), transcript variant X4, mRNA probable xyloglucan endotransglucosylase/hydrolase protein 27(LOC103854033) coding protein psRNATarget
XM_018656797.1
ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1
  =||=*||*|||||||||||||
targets:1067   UCAGCGGCUUAGGGUUUAUGA   1087

3.0 PREDICTED: Brassica rapa probable xyloglucan endotransglucosylase/hydrolase protein 27 (LOC103854033), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018656796.1
ncRNA:21   GGUUCCCAAAUCCCAAAUACU   1
  =||=*||*|||||||||||||
targets:1067   UCAGCGGCUUAGGGUUUAUGA   1087

3.0 PREDICTED: Brassica rapa probable xyloglucan endotransglucosylase/hydrolase protein 27 (LOC103854033), transcript variant X1, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.