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BaseInfo

ncRNA ID novel_bra_miR21
Species Brassica rapa
Class miRNA
Genome position ChrA9:25494698-25494867 [+]
Reference genome Brapa_1.0
Source SRR1485285;SRR1485280
Length 24
Mature sequence(if miRNA) 147 - AUGCUAAGAACUCCACCCUAAGAA - 170
Stem-loop(if miRNA) --    U    AG            A  G          U                             A         AAAACU
  UUUA GGUG  GUUCUUAGCAUA UA AAGAAACGUC UUUAGCUUUUAACUAAGAAAAACUAAGAA CGUUUUUUA      A
  |||| ||||  |||||||||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||||
  GAAU CCAC  CAAGAAUCGUAU AU UUUUUUGCAG GAAUUGAAAAUUGAUUCUUUUUGAUUUUU GUAGAAAAU      A
AA    C    CU            C  A          U                             G         AUAGAG
Stem-loop sequence UUUAUGGUGAGGUUCUUAGCAUAAUAGAAGAAACGUCUUUUAGCUUUUAACUAAGAAAAACUAAGAAACGUUUUUUAAAAACUAAGAGAUAUAAAAGAUGGUUUUUAGUUUUUCUUAGUUAAAAGUUAAGUGACGUUUUUUAUACUAUGCUAAGAACUCCACCCUAAGAA