ncRNA ID | novel_bra_miR21 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA9:25494698-25494867 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485285;SRR1485280 |
Length | 24 |
Mature sequence(if miRNA) | 147 - AUGCUAAGAACUCCACCCUAAGAA - 170 |
Stem-loop(if miRNA) |
--    U    AG            A  G          U                             A         AAAACU   UUUA GGUG  GUUCUUAGCAUA UA AAGAAACGUC UUUAGCUUUUAACUAAGAAAAACUAAGAA CGUUUUUUA      A   |||| ||||  |||||||||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||||   GAAU CCAC  CAAGAAUCGUAU AU UUUUUUGCAG GAAUUGAAAAUUGAUUCUUUUUGAUUUUU GUAGAAAAU      A AA    C    CU            C  A          U                             G         AUAGAG |
Stem-loop sequence | UUUAUGGUGAGGUUCUUAGCAUAAUAGAAGAAACGUCUUUUAGCUUUUAACUAAGAAAAACUAAGAAACGUUUUUUAAAAACUAAGAGAUAUAAAAGAUGGUUUUUAGUUUUUCUUAGUUAAAAGUUAAGUGACGUUUUUUAUACUAUGCUAAGAACUCCACCCUAAGAA |