Search result

BaseInfo

ncRNA ID	novel_bra_miR13
Species	Brassica rapa
Class	miRNA
Genome position	ChrA10:16353221-16353295 [+]
Reference genome	Brapa_1.0
Source	SRR1485285;SRR1485286;SRR1485288;SRR1485289;SRR1592475;SRR1592476;SRR1592478;SRR1161445;SRR1776880;SRR1485258;SRR1776889;SRR1776899;SRR1485259;SRR2912891;SRR2912893;SRR1485260;SRR1485261;SRR1125021;SRR1485262;SRR1485263;SRR1485265;SRR1485270;SRR1485274;SRR1485275;SRR1485276;SRR1485278;SRR1485279;SRR1485280;SRR1485281;SRR1485283;SRR1485284
Length	22
Mature sequence(if miRNA)	54 - CUCGGACCAGGCUUCAUUCCCC - 75
Stem-loop(if miRNA)	--   C  UU      CU     -    GA  AAUGAA   GGA UG  GUCUGG  CGAGG UCAU  AG      A   ||| ||  ||||||  ||||| ||||  ||   CCU AC  CGGACC  GCUCU AGUA  UC      C CC   U  UU      AG     U    AA  CAAAUC
Stem-loop sequence	GGACUGUUGUCUGGCUCGAGGUCAUGAAGAAUGAAACCUAAACCUAAAUGAUUCUCGGACCAGGCUUCAUUCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009108900.1	ncRNA:22   CCCCUUACUUCGGACCAGGCUC   1   **||||||||||||||||||=* targets:947   CUGGAAUGAAGCCUGGUCCGGA   968 Target Full Sequence	2.5	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-15-like (LOC103832807), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC103832807)	coding protein	psRNATarget
XM_009108899.1	ncRNA:22   CCCCUUACUUCGGACCAGGCUC   1   **||||||||||||||||||=* targets:948   CUGGAAUGAAGCCUGGUCCGGA   969 Target Full Sequence	2.5	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-15-like (LOC103832807), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC103832807)	coding protein	psRNATarget
XM_009149461.2	ncRNA:22   CCCCUUACUUCGGACCAGGCUC   1   **||||||||||||||||||=* targets:1172   CUGGAAUGAAGCCUGGUCCGGA   1193 Target Full Sequence	2.5	PREDICTED: Brassica rapa homeobox-leucine zipper protein ATHB-15 (LOC103871234), mRNA	homeobox-leucine zipper protein ATHB-15(LOC103871234)	coding protein	psRNATarget