Search result

BaseInfo

ncRNA ID	novel_bra_miR11
Species	Brassica rapa
Class	miRNA
Genome position	ChrA7:9318331-9318486 [+]
Reference genome	Brapa_1.0
Source	SRR1485284;SRR1485258;SRR1485259;SRR1485260;SRR1485261;SRR1485281
Length	24
Mature sequence(if miRNA)	1 - AAACCCUUGGGCAAACUCUAAACC - 24
Stem-loop(if miRNA)	--          GC          C     A    U  --AU                      UC  AAAACCCUAAA   AAACCCUUGG  AAACUCUAAA CCUUG AUAA UC    ACUCUAAAUCAAAAACACUAAA  CU           C   ||||||||||  |||||||||| ||||| |||| ||    ||||||||||||||||||||||  ||   UUUGGGAACC  UUUGGGAUUU GGAAC UAUU AG    UGAGGUUUAGUUUUUGUGAUUU  GA           C UA          UA          A     C    U  GAUU                      GU  AUUCCCAAAUC
Stem-loop sequence	AAACCCUUGGGCAAACUCUAAACCCUUGAAUAAUUCAUACUCUAAAUCAAAAACACUAAAUCCUAAAACCCUAAACCCUAAACCCUUAAGUGUUUAGUGUUUUUGAUUUGGAGUUUAGGAUUUAUCCAAGGAUUUAGGGUUUAUCCAAGGGUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009149586.2	ncRNA:24   CCAAAUCUCAAACGGGUUCCCAAA   1   *||||*|=|||||||||||||||| targets:1412   AGUUUCGGGUUUGCCCAAGGGUUU   1435 Target Full Sequence	2.0	PREDICTED: Brassica rapa uncharacterized LOC103871342 (LOC103871342), mRNA	uncharacterized LOC103871342(LOC103871342)	coding protein	psRNATarget