ncRNA ID | novel_bra_miR9 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA7:6767586-6767747 [+] |
Reference genome | Brapa_1.0 |
Source | SRR1485284;SRR1485286;SRR1485259;SRR1485279;SRR1485280 |
Length | 24 |
Mature sequence(if miRNA) | 139 - AUAGAGUGAACCAUUGAAGCAAAU - 162 |
Stem-loop(if miRNA) |
--                                              G            A  C             CAA   UUGCUUCAAUGGUUCACUCUAUAAUAGAGUUACUCUAUAAUAGAGU AAAUAUAGAGUA UC UAUUUUUUUACUC   A   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||   AACGAAGUUACCAAGUGAGAUAUUAUCUCAAUGAGAUAUUAUCUCA UUUAUAUCUCAU AG AUAAAAAAGUGAG   U UA                                              A            A  A             AUA |
Stem-loop sequence | UUGCUUCAAUGGUUCACUCUAUAAUAGAGUUACUCUAUAAUAGAGUGAAAUAUAGAGUAAUCCUAUUUUUUUACUCCAAAUAUAGAGUGAAAAAAUAAGAAUACUCUAUAUUUAACUCUAUUAUAGAGUAACUCUAUUAUAGAGUGAACCAUUGAAGCAAAU |