ncRNA ID | novel_bra_miR8 |
Species | Brassica rapa |
Class | miRNA |
Genome position | ChrA7:3190193-3190321 [-] |
Reference genome | Brapa_1.0 |
Source | SRR1485284;SRR1485278;SRR1485280;SRR1485283 |
Length | 24 |
Mature sequence(if miRNA) | 106 - GAUUCCGUCGUGACCAAUUUUGAC - 129 |
Stem-loop(if miRNA) |
--         G    -  AUU     ---  C   -A    -   CCCCA             AUGA  U   GAUUCCGUC UGAC CA   UUGAC   CC AAC  GUUA GCC     GCUCGUUAGAACC    GC U   ||||||||| |||| ||   |||||   || |||  |||| |||     |||||||||||||    || C   UUAAGGCGG AUUG GU   GAUUG   GG UUG  CGGU CGG     UGAGCGAUCUUGG    CG U AA         -    A  --G     AAC  A   AA    U   -----             AGUG  A |
Stem-loop sequence | GAUUCCGUCGUGACCAAUUUUGACCCCAACAGUUAGCCCCCCAGCUCGUUAGAACCAUGAGCUUCUAGCGUGAGGUUCUAGCGAGUGGCUUGGCAAGUUAGGCAAGUUAGGUGAGUUAGGCGGAAUUAA |