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BaseInfo

ncRNA ID novel_bra_miR3
Species Brassica rapa
Class miRNA
Genome position ChrA9:30943807-30943878 [-]
Reference genome Brapa_1.0
Source SRR1160826
Length 24
Mature sequence(if miRNA) 49 - GAGUGAUGAACAAAAAAUAAAAGC - 72
Stem-loop(if miRNA) --                       C  U      U
  GAGUGAUGAACAAAAAAUAAAAG AU ACUCUA A
  ||||||||||||||||||||||| || ||||||
  CUCAUUACUUGUUUUUUAUUUUU UA UGAGGU A
AC                       C  U      A
Stem-loop sequence GAGUGAUGAACAAAAAAUAAAAGCAUUACUCUAUAAAUGGAGUUAUCUUUUUAUUUUUUGUUCAUUACUCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_009142834.2
ncRNA:24   CGAAAAUAAAAAACAAGUAGUGAG   1
  |=*|||*||||||||||*||||||
targets:353   GUGUUUCUUUUUUGUUCUUCACUC   376

2.5 PREDICTED: Brassica rapa probable WRKY transcription factor 21 (LOC103865057), mRNA probable WRKY transcription factor 21(LOC103865057) coding protein psRNATarget