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BaseInfo

ncRNA ID novel_bol_miR260
Species Brassica oleracea
Class miRNA
Genome position ChrC5:39108931-39109107 [-]
Reference genome BOL
Source SRR961924
Length 25
Mature sequence(if miRNA) 153 - AGGAUUUAGGGUUUAGGGUUUAGAA - 177
Stem-loop(if miRNA) --AGGA      G      G      A      G      G      G      G      G      G      G      G     
      UUUAGG UUUAGG UUUAGA UUUAAG UUUAGG UUUAGA UUUAGG UUUAAG UUUAGA UUUAGG UUUAGG UUUAGA
      |||||| |||||| |||||| |||||| |||||| |||||| |||||| |||||| |||||| |||||| |||||| |||||A
      AGAUUU GGAUUU GAAUUU AGAUUU GGAUUU GAAUUU AGAUUU GGAUUU GAAUUU AGAUUU GGAUUU GAAUUU
AAUUUA      G      G      A      G      G      A      G      G      A      G      G     
Stem-loop sequence AGGAUUUAGGGUUUAGGGUUUAGAAUUUAAGGUUUAGGGUUUAGAGUUUAGGGUUUAAGGUUUAGAGUUUAGGGUUUAGGGUUUAGAAUUUAAGGUUUAGGGUUUAGAAUUUAAGGUUUAGGGUUUAGAAUUUAAGGUUUAGGGUUUAGAAUUUAAGGUUUAGGGUUUAGAAUUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013763865.1
ncRNA:25   AAGAUUUGGGAUUUGGGAUUUAGGA   1
  *****||||||||||=|||||||||
targets:58   AGAACAACCCUAAACUCUAAAUCCU   82

1.5 PREDICTED: Brassica oleracea var. oleracea ethylene-responsive transcription factor ERF114-like (LOC106325815), mRNA ethylene-responsive transcription factor ERF114-like(LOC106325815) coding protein psRNATarget