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BaseInfo

ncRNA ID novel_bol_miR251
Species Brassica oleracea
Class miRNA
Genome position ChrC2:40648464-40648543 [-]
Reference genome BOL
Source SRR961924
Length 24
Mature sequence(if miRNA) 1 - UGGCAUUGGUAGUAAUGAGUGUUC - 24
Stem-loop(if miRNA) --C          C     A        CCA     C  U
   CACUCAUUAC AUCAA GCCACGUA   UGUUC GU U
   |||||||||| ||||| ||||||||   ||||| || C
   GUGAGUAAUG UGGUU CGGUGCAU   AUAAG CA A
CUU          A     A        AAC     -  A
Stem-loop sequence CCACUCAUUACCAUCAAAGCCACGUACCAUGUUCCGUUUCAAACGAAUACAAUACGUGGCAUUGGUAGUAAUGAGUGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013749588.1
ncRNA:24   CUUGUGAGUAAUGAUGGUUACGGU   1
  ||||||*|||||=|||||||||||
targets:774   GAACACGCAUUAUUACCAAUGCCA   797

2.5 PREDICTED: Brassica oleracea var. oleracea probable RNA-dependent RNA polymerase 5 (LOC106312177), mRNA probable RNA-dependent RNA polymerase 5(LOC106312177) coding protein psRNATarget