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BaseInfo

ncRNA ID novel_bol_miR242
Species Brassica oleracea
Class miRNA
Genome position ChrC4:46781762-46781841 [+]
Reference genome BOL
Source SRR961924
Length 24
Mature sequence(if miRNA) 57 - UGGCAUUGGUAGUAAUGAGUGUUC - 80
Stem-loop(if miRNA) --C          C     A        CCAUGCUC   U
   UACUCAUUAC AUCAG GCCACGUA        CGU U
   |||||||||| ||||| ||||||||        ||| A
   GUGAGUAAUG UGGUU CGGUGUAU        GCA A
CUU          A     A        -AAAAUAA   A
Stem-loop sequence CUACUCAUUACCAUCAGAGCCACGUACCAUGCUCCGUUUAAAACGAAUAAAAUAUGUGGCAUUGGUAGUAAUGAGUGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013749588.1
ncRNA:24   CUUGUGAGUAAUGAUGGUUACGGU   1
  ||||||*|||||=|||||||||||
targets:774   GAACACGCAUUAUUACCAAUGCCA   797

2.5 PREDICTED: Brassica oleracea var. oleracea probable RNA-dependent RNA polymerase 5 (LOC106312177), mRNA probable RNA-dependent RNA polymerase 5(LOC106312177) coding protein psRNATarget