ncRNA ID | novel_bol_miR236 |
Species | Brassica oleracea |
Class | miRNA |
Genome position | ChrC4:13346834-13346988 [+] |
Reference genome | BOL |
Source | SRR961924 |
Length | 25 |
Mature sequence(if miRNA) | 1 - GUAAUAUAAGAUACGGUCUCUUAUC - 25 |
Stem-loop(if miRNA) |
--                       -UC                     A          A  AAGAG  A      A   GUAAUAUAAGAUACGGUCUCUUA   UUUUAACUUAAAAAGCUAAGA ACGUCUCUUA GU     AU UAAGAG C   |||||||||||||||||||||||   ||||||||||||||||||||| |||||||||| ||     || ||||||   CAUUAUAUUUUAUGCCAGAGGAU   AAAAUUGAAUUUUUCGAUUCU UGCAGAGAAU UA     UG AUUCUC A CA                       UAA                     C          A  GAGAA  A      U |
Stem-loop sequence | GUAAUAUAAGAUACGGUCUCUUAUCUUUUAACUUAAAAAGCUAAGAAACGUCUCUUAAGUAAGAGAUAUAAGAGACAUCUCUUAAGUAAGAGAUAUAAGAGACGUCUCUUAGCUUUUUAAGUUAAAAAAUUAGGAGACCGUAUUUUAUAUUACAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
X96410.1 |
|
3.0 | B.oleracea mRNA for pollen coat oleosin, clone gbopc4 | NA | coding protein | psRNATarget |