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BaseInfo

ncRNA ID novel_bol_miR236
Species Brassica oleracea
Class miRNA
Genome position ChrC4:13346834-13346988 [+]
Reference genome BOL
Source SRR961924
Length 25
Mature sequence(if miRNA) 1 - GUAAUAUAAGAUACGGUCUCUUAUC - 25
Stem-loop(if miRNA) --                       -UC                     A          A  AAGAG  A      A
  GUAAUAUAAGAUACGGUCUCUUA   UUUUAACUUAAAAAGCUAAGA ACGUCUCUUA GU     AU UAAGAG C
  |||||||||||||||||||||||   ||||||||||||||||||||| |||||||||| ||     || ||||||
  CAUUAUAUUUUAUGCCAGAGGAU   AAAAUUGAAUUUUUCGAUUCU UGCAGAGAAU UA     UG AUUCUC A
CA                       UAA                     C          A  GAGAA  A      U
Stem-loop sequence GUAAUAUAAGAUACGGUCUCUUAUCUUUUAACUUAAAAAGCUAAGAAACGUCUCUUAAGUAAGAGAUAUAAGAGACAUCUCUUAAGUAAGAGAUAUAAGAGACGUCUCUUAGCUUUUUAAGUUAAAAAAUUAGGAGACCGUAUUUUAUAUUACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
X96410.1
ncRNA:25   CUAUUCUCUGGCAUAGAAUAUAAUG   1
  |*|||||*|==||||||||||||||
targets:385   GCUAAGAAAUUGUAUCUUAUAUUAC   409

3.0 B.oleracea mRNA for pollen coat oleosin, clone gbopc4 NA coding protein psRNATarget