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BaseInfo

ncRNA ID	novel_bol_miR233
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC3:17797867-17797969 [-]
Reference genome	BOL
Source	SRR961924
Length	25
Mature sequence(if miRNA)	1 - UCUAUUUUAGAAGAAAAUAUAGAGG - 25
Stem-loop(if miRNA)	--          UC            - UC            GU AAA  GU   UCUAUAUUUU  UCUAAAAUAGAG A  UCUAUUAUAGAG  G   AU  U   ||||||||||  |||||||||||| |  ||||||||||||  |   ||   AGAUAUAAAA  AGAUUUUAUCUC U  AGAUAAUAUCUU  U   UA  C GG          GA            A UA            UG AUG  AC
Stem-loop sequence	UCUAUAUUUUUCUCUAAAAUAGAGAUCUCUAUUAUAGAGGUGAAAAUGUUCCAAUGUAUGUUUCUAUAAUAGAAUUACUCUAUUUUAGAAGAAAAUAUAGAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013730115.1	ncRNA:25   GGAGAUAUAAAAGAAGAUUUUAUCU   1   *||||||*||*|||||||||||||| targets:1842   ACUCUAUUUUCUCUUCUAAAAUAGA   1866 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea phosphoinositide phosphatase SAC1 (LOC106294540), transcript variant X3, mRNA	phosphoinositide phosphatase SAC1(LOC106294540)	coding protein	psRNATarget
XM_013730116.1	ncRNA:25   GGAGAUAUAAAAGAAGAUUUUAUCU   1   *||||||*||*|||||||||||||| targets:1743   ACUCUAUUUUCUCUUCUAAAAUAGA   1767 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea phosphoinositide phosphatase SAC1 (LOC106294540), transcript variant X4, mRNA	phosphoinositide phosphatase SAC1(LOC106294540)	coding protein	psRNATarget
XM_013730117.1	ncRNA:25   GGAGAUAUAAAAGAAGAUUUUAUCU   1   *||||||*||*|||||||||||||| targets:1716   ACUCUAUUUUCUCUUCUAAAAUAGA   1740 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea phosphoinositide phosphatase SAC1 (LOC106294540), transcript variant X5, mRNA	phosphoinositide phosphatase SAC1(LOC106294540)	coding protein	psRNATarget
XM_013730118.1	ncRNA:25   GGAGAUAUAAAAGAAGAUUUUAUCU   1   *||||||*||*|||||||||||||| targets:1682   ACUCUAUUUUCUCUUCUAAAAUAGA   1706 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea phosphoinositide phosphatase SAC1 (LOC106294540), transcript variant X6, mRNA	phosphoinositide phosphatase SAC1(LOC106294540)	coding protein	psRNATarget
XM_013730119.1	ncRNA:25   GGAGAUAUAAAAGAAGAUUUUAUCU   1   *||||||*||*|||||||||||||| targets:1659   ACUCUAUUUUCUCUUCUAAAAUAGA   1683 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea phosphoinositide phosphatase SAC1 (LOC106294540), transcript variant X7, mRNA	phosphoinositide phosphatase SAC1(LOC106294540)	coding protein	psRNATarget
XM_013730120.1	ncRNA:25   GGAGAUAUAAAAGAAGAUUUUAUCU   1   *||||||*||*|||||||||||||| targets:1655   ACUCUAUUUUCUCUUCUAAAAUAGA   1679 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea phosphoinositide phosphatase SAC1 (LOC106294540), transcript variant X8, mRNA	phosphoinositide phosphatase SAC1(LOC106294540)	coding protein	psRNATarget