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BaseInfo

ncRNA ID ath-miRf10705-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 24
Mature sequence(if miRNA) NA - GCGAUGGUCAUGACGGUUGAUGUU - NA
Stem-loop(if miRNA)     --G     - G        GA GG  G  G      A  CAUG       A    AAU -    -----  G - UGUGAAAUCACAGGGAAGACAUACAU
GCGA   AAACG C AUGGUCAU  C  UU AU UUUAUG CC    GAAAUCC GAGC   C AUUG     UG C U                          A
||||   ||||| | ||||||||  |  || || |||||| ||    ||||||| ||||   | ||||     || | |                          U
UGCU   UUUGU G UACCGGUA  G  GA UG GAAUAC GG    UUUUAGG UAGA   G AAAA     UG G G                          G
    GGG     A G        -- UU  G  G      -  ----       -    --- A    GAACA  - A AACGCCCGAUUUUCCUCUGGCCUCGG
Stem-loop sequence GCGAGAAACGCGAUGGUCAUGACGGUUGAUGUUUAUGACCCAUGGAAAUCCAGAGCAAUCAUUGUGGCUUGUGAAAUCACAGGGAAGACAUACAUAUGGGCUCCGGUCUCCUUUUAGCCCGCAAGAGGUACAAGAAAAAGAGAUGGAUUUUGGCAUAAGGGUGAGUUGAUGGCCAUGGAUGUUUGGGUCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_105582.2
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||||||||||||||||||||||||
targets:995   AACAUCAACCGUCAUGACCAUCGC   1018

0.0 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA Cysteine/Histidine-rich C1 domain family protein(AT1G69150) coding protein psRNATarget
NM_001125864.2
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  *||||||||||||||||||||||=
targets:625   UACAUCAACCGUCAUGACCAUCGU   648

1.0 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA Cysteine/Histidine-rich C1 domain family protein(AT5G39471) coding protein psRNATarget
NM_001345074.1
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  |=|||*||||||||||||||||||
targets:639   AGCAUAAACCGUCAUGACCAUCGC   662

1.0 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA Cysteine/Histidine-rich C1 domain family protein(AT5G54020) coding protein psRNATarget
NM_124781.2
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  |=|||*||||||||||||||||||
targets:629   AGCAUAAACCGUCAUGACCAUCGC   652

1.0 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA Cysteine/Histidine-rich C1 domain family protein(AT5G54020) coding protein psRNATarget
AK229741.1
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  |=|||*||||||||||||||||||
targets:508   AGCAUAAACCGUCAUGACCAUCGC   531

1.0 Arabidopsis thaliana mRNA for CHP-rich zinc finger protein-like, partial cds, clone: RAFL21-50-O03 NA coding protein psRNATarget
NM_111580.4
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||||||||||||||||||||*|||
targets:636   AACAUCAACCGUCAUGACCACCGC   659

1.5 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA Cysteine/Histidine-rich C1 domain family protein(AT3G07000) coding protein psRNATarget
BX824703.1
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||||||||||||||||||||*|||
targets:629   AACAUCAACCGUCAUGACCACCGC   652

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZC11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT030350.1
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||||||||||||||||||||*|||
targets:538   AACAUCAACCGUCAUGACCACCGC   561

1.5 Arabidopsis thaliana At3g07000 mRNA, complete cds NA coding protein psRNATarget
NM_111579.1
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||||||||||||||||||||*|||
targets:490   AACAUCAACCGUCAUGACCACCGC   513

1.5 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein partial mRNA Cysteine/Histidine-rich C1 domain family protein(AT3G06990) coding protein psRNATarget
NM_124783.1
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  |=|||*||=|||||||||||||||
targets:610   AGCAUAAAUCGUCAUGACCAUCGC   633

2.0 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein partial mRNA Cysteine/Histidine-rich C1 domain family protein(AT5G54040) coding protein psRNATarget
NM_180566.2
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  |=|||*||=|||||||||||||||
targets:595   AGCAUAAAUCGUCAUGACCAUCGC   618

2.0 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein partial mRNA Cysteine/Histidine-rich C1 domain family protein(AT5G29624) coding protein psRNATarget
AY144102.1
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||||||||=||||||||=||||||
targets:635   AACAUCAAUCGUCAUGAUCAUCGC   658

2.5 Arabidopsis thaliana hypothetical protein (At2g43220/F14B2.16) mRNA, complete cds NA coding protein psRNATarget
NM_129884.4
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||||||||=||||||||=||||||
targets:635   AACAUCAAUCGUCAUGAUCAUCGC   658

2.5 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA Cysteine/Histidine-rich C1 domain family protein(AT2G43220) coding protein psRNATarget
NM_148862.1
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||||||||=||||||||=||||||
targets:859   AACAUCAAUCGUCAUGAUCAUCGC   882

2.5 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein partial mRNA Cysteine/Histidine-rich C1 domain family protein(AT3G48400) coding protein psRNATarget
AY078933.1
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||||||||=||||||||=||||||
targets:564   AACAUCAAUCGUCAUGAUCAUCGC   587

2.5 Arabidopsis thaliana At2g43220/F14B2.16 mRNA, complete cds NA coding protein psRNATarget
NM_125385.2
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||=|||||=||||||||=||||||
targets:1118   AAUAUCAAUCGUCAUGAUCAUCGC   1141

2.5 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein (ULI3), mRNA Cysteine/Histidine-rich C1 domain family protein(ULI3) coding protein psRNATarget
NM_125387.2
ncRNA:24   UUGUAGUUGGCAGUACUGGUAGCG   1
  ||||||||||||||*||||||||=
targets:1034   AACAUCAACCGUCACGACCAUCGU   1057

2.5 Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA Cysteine/Histidine-rich C1 domain family protein(AT5G59940) coding protein psRNATarget
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