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BaseInfo

ncRNA ID novel_bol_miR196
Species Brassica oleracea
Class miRNA
Genome position ChrC8:18382088-18382241 [+]
Reference genome BOL
Source SRR961925
Length 24
Mature sequence(if miRNA) 1 - GUGGGAUUCUUAGCGGAAUAUAAG - 24
Stem-loop(if miRNA) --    GA  C                -  AUG   C                    C         G        UA
  GUGG  UU UUAGCGGAAUAUAAGA CC   UCU UUAACUUUUAACUAAAAAAG UAAGAACCG UUCUUAAA  A
  ||||  || |||||||||||||||| ||   ||| |||||||||||||||||||| ||||||||| ||||||||  G
  CACC  AA AAUCGCCUUAUAUUCU GG   AGA AAUUGAAAAUUGAUUUUUUC AUUCUUGGC GAGAAUUU  A
CC    UC  A                U  --G   U                    C         A        UG
Stem-loop sequence GUGGGAUUCUUAGCGGAAUAUAAGACCAUGUCUCUUAACUUUUAACUAAAAAAGCUAAGAACCGGUUCUUAAAUAAGAGUUUUAAGAGACGGUUCUUACCUUUUUUAGUUAAAAGUUAAUAGAGGGUUCUUAUAUUCCGCUAAAAACUCCACCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
X96410.1
ncRNA:24   GAAUAUAAGGCGAUUCUUAGGGUG   1
  ||||||||*||||||||||||||*
targets:400   CUUAUAUUACGCUAAGAAUCCCAA   423

2.0 B.oleracea mRNA for pollen coat oleosin, clone gbopc4 NA coding protein psRNATarget