ncRNA ID | novel_bol_miR196 |
Species | Brassica oleracea |
Class | miRNA |
Genome position | ChrC8:18382088-18382241 [+] |
Reference genome | BOL |
Source | SRR961925 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GUGGGAUUCUUAGCGGAAUAUAAG - 24 |
Stem-loop(if miRNA) |
--    GA  C                -  AUG   C                    C         G        UA   GUGG  UU UUAGCGGAAUAUAAGA CC   UCU UUAACUUUUAACUAAAAAAG UAAGAACCG UUCUUAAA  A   ||||  || |||||||||||||||| ||   ||| |||||||||||||||||||| ||||||||| ||||||||  G   CACC  AA AAUCGCCUUAUAUUCU GG   AGA AAUUGAAAAUUGAUUUUUUC AUUCUUGGC GAGAAUUU  A CC    UC  A                U  --G   U                    C         A        UG |
Stem-loop sequence | GUGGGAUUCUUAGCGGAAUAUAAGACCAUGUCUCUUAACUUUUAACUAAAAAAGCUAAGAACCGGUUCUUAAAUAAGAGUUUUAAGAGACGGUUCUUACCUUUUUUAGUUAAAAGUUAAUAGAGGGUUCUUAUAUUCCGCUAAAAACUCCACCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
X96410.1 |
|
2.0 | B.oleracea mRNA for pollen coat oleosin, clone gbopc4 | NA | coding protein | psRNATarget |