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BaseInfo

ncRNA ID	novel_bol_miR188
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC7:37268428-37268532 [-]
Reference genome	BOL
Source	SRR961925
Length	22
Mature sequence(if miRNA)	84 - CAGCCAAGGAUGACUUGCCGGA - 105
Stem-loop(if miRNA)	--C    -     UG           CGU          G   AAAA A    GA    AGCC AAGGA  ACUUGCCGGAG   UGUUCAUCAU CAU    A UAUU  U    |||| |||||  |||||||||||   |||||||||| |||    | ||||    UCGG UUCCU  UGAACGGUCUU   ACAAGUAGUG GUA    U GUAG  G ACA    C     GU           AAU          -   ---G A    UA
Stem-loop sequence	CAGCCAAGGAUGACUUGCCGGAGCGUUGUUCAUCAUGCAUAAAAAAUAUUGAUGAUGAUGAUGAUGGUGAUGAACAUAAUUCUGGCAAGUUGUCCUUCGGCUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013746349.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||| targets:1096   AGAGGGAAGUCAUCCUUGGCUG   1117 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-8-like (LOC106309310), mRNA	nuclear transcription factor Y subunit A-8-like(LOC106309310)	coding protein	psRNATarget
XM_013737363.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ||=||*|||||||||||||||* targets:1090   UCUGGGAAGUCAUCCUUGGCUA   1111 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-5 (LOC106301057), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5(LOC106301057)	coding protein	psRNATarget
XM_013737362.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ||=||*|||||||||||||||* targets:1113   UCUGGGAAGUCAUCCUUGGCUA   1134 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-5 (LOC106301057), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5(LOC106301057)	coding protein	psRNATarget
XM_013763521.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   **|||*|||||||||||||||* targets:1165   GACGGGAAGUCAUCCUUGGCUA   1186 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-6 (LOC106325469), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-6(LOC106325469)	coding protein	psRNATarget
XM_013763527.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   **|||*|||||||||||||||* targets:1169   GACGGGAAGUCAUCCUUGGCUA   1190 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-6 (LOC106325469), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-6(LOC106325469)	coding protein	psRNATarget
XM_013763546.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   **|||*|||||||||||||||* targets:1337   GACGGGAAGUCAUCCUUGGCUA   1358 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-6 (LOC106325469), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-6(LOC106325469)	coding protein	psRNATarget
XM_013763539.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   **|||*|||||||||||||||* targets:1346   GACGGGAAGUCAUCCUUGGCUA   1367 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-6 (LOC106325469), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-6(LOC106325469)	coding protein	psRNATarget
XM_013763532.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   **|||*|||||||||||||||* targets:1373   GACGGGAAGUCAUCCUUGGCUA   1394 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-6 (LOC106325469), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-6(LOC106325469)	coding protein	psRNATarget
XM_013767367.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:894   GAAGGGAAGUCAUCCUUGGCUA   915 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-5-like (LOC106328840), mRNA	nuclear transcription factor Y subunit A-5-like(LOC106328840)	coding protein	psRNATarget
XM_013736227.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1188   AAGGGGAAGUCAUCCUUGGCUA   1209 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106300139), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106300139)	coding protein	psRNATarget
XM_013736226.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1221   AAGGGGAAGUCAUCCUUGGCUA   1242 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106300139), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106300139)	coding protein	psRNATarget
XM_013758500.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1298   CGGGGGAAGUCAUCCUUGGCUA   1319 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106320111), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106320111)	coding protein	psRNATarget
XM_013758482.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1318   CGGGGGAAGUCAUCCUUGGCUA   1339 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106320111), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106320111)	coding protein	psRNATarget
XM_013733208.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1290   AAGGGGAAGUCAUCCUUGGCUA   1311 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106296948), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106296948)	coding protein	psRNATarget
XM_013736224.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1276   AAGGGGAAGUCAUCCUUGGCUA   1297 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106300139), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106300139)	coding protein	psRNATarget
XM_013758513.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1392   CGGGGGAAGUCAUCCUUGGCUA   1413 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106320111), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106320111)	coding protein	psRNATarget
XM_013758504.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1404   CGGGGGAAGUCAUCCUUGGCUA   1425 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106320111), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106320111)	coding protein	psRNATarget
XM_013758496.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1411   CGGGGGAAGUCAUCCUUGGCUA   1432 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106320111), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106320111)	coding protein	psRNATarget
XM_013758489.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1423   CGGGGGAAGUCAUCCUUGGCUA   1444 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106320111), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106320111)	coding protein	psRNATarget
XM_013758478.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1517   CGGGGGAAGUCAUCCUUGGCUA   1538 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106320111), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106320111)	coding protein	psRNATarget
XM_013736225.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1594   AAGGGGAAGUCAUCCUUGGCUA   1615 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106300139), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106300139)	coding protein	psRNATarget
XM_013736223.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1656   AAGGGGAAGUCAUCCUUGGCUA   1677 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106300139), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106300139)	coding protein	psRNATarget
XM_013736221.1	ncRNA:22   AGGCCGUUCAGUAGGAACCGAC   1   ***||*|||||||||||||||* targets:1689   AAGGGGAAGUCAUCCUUGGCUA   1710 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-3-like (LOC106300139), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC106300139)	coding protein	psRNATarget