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BaseInfo

ncRNA ID	novel_bol_miR176
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC6:27745409-27745584 [+]
Reference genome	BOL
Source	SRR961925;SRR961924
Length	20
Mature sequence(if miRNA)	157 - UUUGGAUUGAAGGGAGCUCU - 176
Stem-loop(if miRNA)	--        A         C   -   -UC    ------      AGA      G  A  C    A UC     -    CU       AAU   GGCUCCUU UAGUUCAAA GAG AGU   AGCA      GGGUAA   AAAGCU CU AG UAUG A  CCAUA AGCC  AAUCCUU   U   |||||||| ||||||||| ||| |||   ||||      ||||||   |||||| || || |||| |  ||||| ||||  |||||||   A   UCGAGGGA GUUAGGUUU CUU UCA   UCGU      CCCGUU   UUUCGA GA UC AUAC U  GGUAU UUGG  UUAGGAA   U UC        A         -   A   UUU    UAAUUU      CAA      G  C  U    A UC     A    -U       AGA
Stem-loop sequence	GGCUCCUUAUAGUUCAAACGAGAGUUCAGCAGGGUAAAGAAAAGCUGCUAAGCUAUGAAUCCCAUAAGCCCUAAUCCUUAAUUAUAGAAAGGAUUUGGUUAUAUGGCUUACAUAUCUCAGGAGCUUUAACUUGCCCUUUAAUUGCUUUUACUAUUCUUUGGAUUGAAGGGAGCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013771493.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   ||||||=||||||=|||||| targets:1016   AGAGCUUCCUUCAGUCCAAA   1035 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB-like (LOC106333008), mRNA	transcription factor GAMYB-like(LOC106333008)	coding protein	psRNATarget
XM_013779455.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   ||||||=|||||||*||||| targets:920   AGAGCUUCCUUCAAACCAAA   939 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor MYB28-like (LOC106340604), mRNA	transcription factor MYB28-like(LOC106340604)	coding protein	psRNATarget
XM_013752729.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   ||||=|||||||||*||||| targets:1164   AGAGUUCCCUUCAAACCAAA   1183 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor MYB26-like (LOC106314936), mRNA	transcription factor MYB26-like(LOC106314936)	coding protein	psRNATarget
XM_013779863.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   =||||||||||||*|||||* targets:820   GGAGCUCCCUUCAUUCCAAU   839 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor MYB104-like (LOC106341045), transcript variant X2, mRNA	transcription factor MYB104-like(LOC106341045)	coding protein	psRNATarget
XM_013779862.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   =||||||||||||*|||||* targets:820   GGAGCUCCCUUCAUUCCAAU   839 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor MYB104-like (LOC106341045), transcript variant X1, mRNA	transcription factor MYB104-like(LOC106341045)	coding protein	psRNATarget
XM_013730417.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   =||||||||||||*|||||* targets:1085   GGAGCUCCCUUCAUUCCAAU   1104 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB (LOC106294769), transcript variant X2, mRNA	transcription factor GAMYB(LOC106294769)	coding protein	psRNATarget
XM_013760835.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   =||||||||||||*|||||* targets:1153   GGAGCUCCCUUCAUUCCAAU   1172 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB-like (LOC106322709), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC106322709)	coding protein	psRNATarget
XM_013768221.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   =||||||||||||*|||||* targets:1354   GGAGCUCCCUUCAUUCCAAU   1373 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor MYB104-like (LOC106329536), mRNA	transcription factor MYB104-like(LOC106329536)	coding protein	psRNATarget
XM_013730418.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   =||||||||||||*|||||* targets:1523   GGAGCUCCCUUCAUUCCAAU   1542 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB (LOC106294769), transcript variant X3, mRNA	transcription factor GAMYB(LOC106294769)	coding protein	psRNATarget
XM_013730416.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   =||||||||||||*|||||* targets:1522   GGAGCUCCCUUCAUUCCAAU   1541 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB (LOC106294769), transcript variant X1, mRNA	transcription factor GAMYB(LOC106294769)	coding protein	psRNATarget
XM_013760843.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   =||||||||||||*|||||* targets:1764   GGAGCUCCCUUCAUUCCAAU   1783 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB-like (LOC106322709), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC106322709)	coding protein	psRNATarget
XM_013760827.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   =||||||||||||*|||||* targets:1764   GGAGCUCCCUUCAUUCCAAU   1783 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB-like (LOC106322709), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC106322709)	coding protein	psRNATarget
XM_013741149.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   |||||*||||||||*||||| targets:680   AGAGCCCCCUUCAAACCAAA   699 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106304755 (LOC106304755), transcript variant X4, mRNA	uncharacterized LOC106304755(LOC106304755)	coding protein	psRNATarget
XM_013741150.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   |||||*||||||||*||||| targets:680   AGAGCCCCCUUCAAACCAAA   699 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106304755 (LOC106304755), transcript variant X5, mRNA	uncharacterized LOC106304755(LOC106304755)	coding protein	psRNATarget
XM_013772207.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   |||||*||||||||*||||| targets:623   AGAGCCCCCUUCAAACCAAA   642 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106333805 (LOC106333805), transcript variant X2, mRNA	uncharacterized LOC106333805(LOC106333805)	coding protein	psRNATarget
XM_013772206.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   |||||*||||||||*||||| targets:623   AGAGCCCCCUUCAAACCAAA   642 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106333805 (LOC106333805), transcript variant X1, mRNA	uncharacterized LOC106333805(LOC106333805)	coding protein	psRNATarget
XM_013741148.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   |||||*||||||||*||||| targets:680   AGAGCCCCCUUCAAACCAAA   699 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106304755 (LOC106304755), transcript variant X3, mRNA	uncharacterized LOC106304755(LOC106304755)	coding protein	psRNATarget
XM_013741147.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   |||||*||||||||*||||| targets:680   AGAGCCCCCUUCAAACCAAA   699 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106304755 (LOC106304755), transcript variant X2, mRNA	uncharacterized LOC106304755(LOC106304755)	coding protein	psRNATarget
XM_013741146.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   |||||*||||||||*||||| targets:680   AGAGCCCCCUUCAAACCAAA   699 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106304755 (LOC106304755), transcript variant X1, mRNA	uncharacterized LOC106304755(LOC106304755)	coding protein	psRNATarget
XM_013773472.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   |||*||||||||||*||||| targets:1137   AGACCUCCCUUCAAACCAAA   1156 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea myb-like protein A (LOC106335055), mRNA	myb-like protein A(LOC106335055)	coding protein	psRNATarget
XM_013767865.1	ncRNA:20   UCUCGAGGGAAGUUAGGUUU   1   =*|||||||*|||||||||| targets:472   GAAGCUCCCCUCAAUCCAAA   491 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea actin-12 (LOC106329240), mRNA	actin-12(LOC106329240)	coding protein	psRNATarget