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BaseInfo

ncRNA ID	novel_bol_miR158
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC4:1161930-1162122 [-]
Reference genome	BOL
Source	SRR961925;SRR961924
Length	19
Mature sequence(if miRNA)	1 - UUUGGAUUGAAGGGAGCUC - 19
Stem-loop(if miRNA)	--          -      A         CA   UUUA    A  ----------     --U    A      UU UU    G UU   -C   U        GA   GCUCCCUUCG UCCAAA CGAAGAGGA  AGA    AGGA AU          AGAAA   AGAA AUCUAA  G  CAUG A  CCC  UAU AAGUGCUU  A   |||||||||| |||||| |||||||||  |||    |||| ||          |||||   |||| ||||||  |  |||| |  |||  ||| ||||||||  U   CGAGGGAAGU AGGUUU GCUUCUCUU  UCU    UCCU UA          UCUUU   UCUU UAGAUU  C  GUAC U  GGG  AUA UUCACGAG  A CU          U      -         -C   ----    A  UAUAUGCAUC     CUC    C      CU CG    G UU   AA   U        UA
Stem-loop sequence	GCUCCCUUCGUCCAAAACGAAGAGGACAAGAUUUAAGGAAAUAGAAAUAGAAAAUCUAAUUGUUCAUGGAUUCCCCUAUUAAGUGCUUGAAUAAUGAGCACUUUAUAAAGGGUUUGCAUGGCCUCUUAGAUCUUCUCUCUUUCUCUACGUAUAUAUAUCCUUCUCUUCUCUUCGUUUGGAUUGAAGGGAGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013771493.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   |||||=||||||=|||||| targets:1017   GAGCUUCCUUCAGUCCAAA   1035 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB-like (LOC106333008), mRNA	transcription factor GAMYB-like(LOC106333008)	coding protein	psRNATarget
XM_013779455.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   |||||=|||||||*||||| targets:921   GAGCUUCCUUCAAACCAAA   939 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor MYB28-like (LOC106340604), mRNA	transcription factor MYB28-like(LOC106340604)	coding protein	psRNATarget
XM_013752729.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   |||=|||||||||*||||| targets:1165   GAGUUCCCUUCAAACCAAA   1183 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor MYB26-like (LOC106314936), mRNA	transcription factor MYB26-like(LOC106314936)	coding protein	psRNATarget
XM_013779863.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||||||||||*|||||* targets:821   GAGCUCCCUUCAUUCCAAU   839 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor MYB104-like (LOC106341045), transcript variant X2, mRNA	transcription factor MYB104-like(LOC106341045)	coding protein	psRNATarget
XM_013779862.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||||||||||*|||||* targets:821   GAGCUCCCUUCAUUCCAAU   839 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor MYB104-like (LOC106341045), transcript variant X1, mRNA	transcription factor MYB104-like(LOC106341045)	coding protein	psRNATarget
XM_013767865.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   *|||||||*|||||||||| targets:473   AAGCUCCCCUCAAUCCAAA   491 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea actin-12 (LOC106329240), mRNA	actin-12(LOC106329240)	coding protein	psRNATarget
XM_013730417.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||||||||||*|||||* targets:1086   GAGCUCCCUUCAUUCCAAU   1104 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB (LOC106294769), transcript variant X2, mRNA	transcription factor GAMYB(LOC106294769)	coding protein	psRNATarget
XM_013760835.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||||||||||*|||||* targets:1154   GAGCUCCCUUCAUUCCAAU   1172 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB-like (LOC106322709), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC106322709)	coding protein	psRNATarget
XM_013768221.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||||||||||*|||||* targets:1355   GAGCUCCCUUCAUUCCAAU   1373 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor MYB104-like (LOC106329536), mRNA	transcription factor MYB104-like(LOC106329536)	coding protein	psRNATarget
XM_013730418.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||||||||||*|||||* targets:1524   GAGCUCCCUUCAUUCCAAU   1542 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB (LOC106294769), transcript variant X3, mRNA	transcription factor GAMYB(LOC106294769)	coding protein	psRNATarget
XM_013730416.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||||||||||*|||||* targets:1523   GAGCUCCCUUCAUUCCAAU   1541 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB (LOC106294769), transcript variant X1, mRNA	transcription factor GAMYB(LOC106294769)	coding protein	psRNATarget
XM_013760843.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||||||||||*|||||* targets:1765   GAGCUCCCUUCAUUCCAAU   1783 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB-like (LOC106322709), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC106322709)	coding protein	psRNATarget
XM_013760827.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||||||||||*|||||* targets:1765   GAGCUCCCUUCAUUCCAAU   1783 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea transcription factor GAMYB-like (LOC106322709), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC106322709)	coding protein	psRNATarget
XM_013741149.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||*||||||||*||||| targets:681   GAGCCCCCUUCAAACCAAA   699 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106304755 (LOC106304755), transcript variant X4, mRNA	uncharacterized LOC106304755(LOC106304755)	coding protein	psRNATarget
XM_013741150.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||*||||||||*||||| targets:681   GAGCCCCCUUCAAACCAAA   699 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106304755 (LOC106304755), transcript variant X5, mRNA	uncharacterized LOC106304755(LOC106304755)	coding protein	psRNATarget
XM_013772207.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||*||||||||*||||| targets:624   GAGCCCCCUUCAAACCAAA   642 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106333805 (LOC106333805), transcript variant X2, mRNA	uncharacterized LOC106333805(LOC106333805)	coding protein	psRNATarget
XM_013772206.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||*||||||||*||||| targets:624   GAGCCCCCUUCAAACCAAA   642 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106333805 (LOC106333805), transcript variant X1, mRNA	uncharacterized LOC106333805(LOC106333805)	coding protein	psRNATarget
XM_013741148.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||*||||||||*||||| targets:681   GAGCCCCCUUCAAACCAAA   699 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106304755 (LOC106304755), transcript variant X3, mRNA	uncharacterized LOC106304755(LOC106304755)	coding protein	psRNATarget
XM_013741147.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||*||||||||*||||| targets:681   GAGCCCCCUUCAAACCAAA   699 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106304755 (LOC106304755), transcript variant X2, mRNA	uncharacterized LOC106304755(LOC106304755)	coding protein	psRNATarget
XM_013741146.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||||*||||||||*||||| targets:681   GAGCCCCCUUCAAACCAAA   699 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106304755 (LOC106304755), transcript variant X1, mRNA	uncharacterized LOC106304755(LOC106304755)	coding protein	psRNATarget
XM_013773472.1	ncRNA:19   CUCGAGGGAAGUUAGGUUU   1   ||*||||||||||*||||| targets:1138   GACCUCCCUUCAAACCAAA   1156 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea myb-like protein A (LOC106335055), mRNA	myb-like protein A(LOC106335055)	coding protein	psRNATarget