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BaseInfo

ncRNA ID	ath-miRf10700-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - CUCUCUUUCUCCAUGGCUGAC - NA
Stem-loop(if miRNA)	U  U           CCA   CU  CUU       U   UUUUUCUUCU   -  G   G U  UC UCUCUCUUUCU   UGG  GA   GUUGUUG UGU          UCA UG AGC A G  || |||||||||||   |||  ||   ||||||| |||          ||| || ||| |  AG AGAGAGAAAGA   AUU  CU   UAAUAAC GCG          AGU AU UCG U U A  C           AAA   UU  UUU       U   --------UU   U  G   G U
Stem-loop sequence	UUCUUCUCUCUUUCUCCAUGGCUGACUUGUUGUUGUUGUUUUUUCUUCUUCAUGGAGCGAUGUUUGGCUGUAUUGAUUGCGUCAAUAAUUUUUCUUUUAAAAAGAAAGAGAGACGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001333894.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   ||||||||||||||||||||| targets:59   GUCAGCCAUGGAGAAAGAGAG   79 Target Full Sequence	0.0	Arabidopsis thaliana pantothenate kinase 1 (PANK1), mRNA	pantothenate kinase 1(PANK1)	coding protein	psRNATarget
NM_104731.5	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   ||||||||||||||||||||| targets:61   GUCAGCCAUGGAGAAAGAGAG   81 Target Full Sequence	0.0	Arabidopsis thaliana pantothenate kinase 1 (PANK1), mRNA	pantothenate kinase 1(PANK1)	coding protein	psRNATarget
AK229327.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   ||||||||||||||||||||| targets:44   GUCAGCCAUGGAGAAAGAGAG   64 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-58-H06	NA	coding protein	psRNATarget
BX814015.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   ||||||||||||||||||||| targets:33   GUCAGCCAUGGAGAAAGAGAG   53 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB52ZC03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001333895.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   ||||||||||||||||||||| targets:46   GUCAGCCAUGGAGAAAGAGAG   66 Target Full Sequence	0.0	Arabidopsis thaliana pantothenate kinase 1 (PANK1), mRNA	pantothenate kinase 1(PANK1)	coding protein	psRNATarget
NM_202279.4	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *||||*|||||||||||*||| targets:992   CUCAGACAUGGAGAAAGCGAG   1012 Target Full Sequence	2.5	Arabidopsis thaliana O-fucosyltransferase family protein mRNA	O-fucosyltransferase family protein(AT1G52630)	coding protein	psRNATarget
AK319080.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *||||*|||||||||||*||| targets:1019   CUCAGACAUGGAGAAAGCGAG   1039 Target Full Sequence	2.5	Arabidopsis thaliana AT1G52630 mRNA, complete cds, clone: RAFL25-35-C22	NA	coding protein	psRNATarget
NM_104141.5	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *||||*|||||||||||*||| targets:958   CUCAGACAUGGAGAAAGCGAG   978 Target Full Sequence	2.5	Arabidopsis thaliana O-fucosyltransferase family protein mRNA	O-fucosyltransferase family protein(AT1G52630)	coding protein	psRNATarget
AY074537.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *||||*|||||||||||*||| targets:865   CUCAGACAUGGAGAAAGCGAG   885 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At1g52630) mRNA, complete cds	NA	coding protein	psRNATarget
BX816713.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *||||*|||||||||||*||| targets:891   CUCAGACAUGGAGAAAGCGAG   911 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH65ZB01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX816400.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *||||*|||||||||||*||| targets:917   CUCAGACAUGGAGAAAGCGAG   937 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH46ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX816742.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *||||*|||||||||||*||| targets:890   CUCAGACAUGGAGAAAGCGAG   910 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZE07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY096411.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *||||*|||||||||||*||| targets:836   CUCAGACAUGGAGAAAGCGAG   856 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At1g52630) mRNA, complete cds	NA	coding protein	psRNATarget
KY906049.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *||||*|||||||||||*||| targets:836   CUCAGACAUGGAGAAAGCGAG   856 Target Full Sequence	2.5	Arabidopsis thaliana O-fucosyltransferase family protein (AT1G52630.1) mRNA, partial cds	NA	coding protein	psRNATarget
NM_119883.3	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *|*|||||||||*|||||||| targets:906   UUAAGCCAUGGAUAAAGAGAG   926 Target Full Sequence	2.5	Arabidopsis thaliana Thioredoxin superfamily protein (HCF164), mRNA	Thioredoxin superfamily protein(HCF164)	coding protein	psRNATarget
AY075671.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *|*|||||||||*|||||||| targets:789   UUAAGCCAUGGAUAAAGAGAG   809 Target Full Sequence	2.5	Arabidopsis thaliana AT4g37200/C7A10_160 mRNA, complete cds	NA	coding protein	psRNATarget
AJ293262.1	ncRNA:21   CAGUCGGUACCUCUUUCUCUC   1   *|*|||||||||*|||||||| targets:777   UUAAGCCAUGGAUAAAGAGAG   797 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for thioredoxin-like protein (hcf164 gene)	NA	coding protein	psRNATarget