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BaseInfo

ncRNA ID novel_bol_miR153
Species Brassica oleracea
Class miRNA
Genome position ChrC4:10270133-10270230 [+]
Reference genome BOL
Source SRR961925
Length 20
Mature sequence(if miRNA) 1 - GUCGGAAUUUCGUCGGAAUC - 20
Stem-loop(if miRNA) --       U           C       AUA      C     --UUU  A
  GUCGGAA UUCGUCGGAAU AUUAAAU   UAUUCG GAAAA     UC C
  ||||||| ||||||||||| |||||||   |||||| |||||     ||
  UAGCCUU GGGUAGCCUUA UAGUUUA   AUGGGC CUUUU     GG G
GG       U           -       ---      C     UCUUU  C
Stem-loop sequence GUCGGAAUUUCGUCGGAAUCAUUAAAUAUAUAUUCGCGAAAAUUUUCACGCGGUUUCUUUUUCCCGGGUAAUUUGAUAUUCCGAUGGGUUUCCGAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013768734.1
ncRNA:20   CUAAGGCUGCUUUAAGGCUG   1
  *||*|||||||*||||||||
targets:2929   UAUACCGACGACAUUCCGAC   2948

2.5 PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106330226 (LOC106330226), mRNA uncharacterized LOC106330226(LOC106330226) coding protein psRNATarget