ncRNA ID | novel_bol_miR143 |
Species | Brassica oleracea |
Class | miRNA |
Genome position | ChrC4:7349945-7350157 [+] |
Reference genome | BOL |
Source | SRR961925 |
Length | 27 |
Mature sequence(if miRNA) | 187 - AGAACCCCGGGUUAAUCAUGGUCUAUC - 213 |
Stem-loop(if miRNA) |
--A   G              A        GA       C  A      C                                                      UA    AGA CAUGAUUAACCCGG GUUCUUAG  UGGGGUU UU GCGGAA UUAAGAAACUGUUUCUUAAUUUUUAACUAAAAAAGCUAAGAACUGGUUCUUAAA  A    ||| |||||||||||||| ||||||||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  G    UCU GUACUAAUUGGGCC CAAGAAUC  AUCUCAA AA CGCCUU AAUUCUUUGACAAAGAAUUGAAAAUUGAUUUUUUUGAUUCUUGACCAAGAAUUU  G CUA   G              C        UC       A  A      C                                                      CA |
Stem-loop sequence | AAGAGCAUGAUUAACCCGGAGUUCUUAGGAUGGGGUUCUUAGCGGAACUUAAGAAACUGUUUCUUAAUUUUUAACUAAAAAAGCUAAGAACUGGUUCUUAAAUAAGGACUUUAAGAACCAGUUCUUAGUUUUUUUAGUUAAAAGUUAAGAAACAGUUUCUUAACUUCCGCAAAAAACUCUACUCUAAGAACCCCGGGUUAAUCAUGGUCUAUC |