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BaseInfo

ncRNA ID ath-miRf10695-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - CAAGCACAACAUAUCCUCUU - NA
Stem-loop(if miRNA) ---GG          C   --UCCUC        UUUU   UCUGU     CUA
     ACAAGCACAA AUA       UUCUUUGG    GUC     GGCAA   C
     |||||||||| |||       ||||||||    |||     |||||
     UGUUCGUGUU UGU       AAGAAACC    CGG     UCGUU   A
CCAAA          C   CACGCAC        UGUU   ----U     UCU
Stem-loop sequence GGACAAGCACAACAUAUCCUCUUCUUUGGUUUUGUCUCUGUGGCAACUACAUCUUUGCUUGGCUUGUCCAAAGAACACGCACUGUCUUGUGCUUGUAAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001338158.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:916   AAGAGGAUAUGUUGUGCUUG   935

0.0 Arabidopsis thaliana cytochrome c oxidase 17 (COX17), partial mRNA cytochrome c oxidase 17(COX17) coding protein psRNATarget
NM_001338159.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:477   AAGAGGAUAUGUUGUGCUUG   496

0.0 Arabidopsis thaliana cytochrome c oxidase 17 (COX17), partial mRNA cytochrome c oxidase 17(COX17) coding protein psRNATarget
NM_112400.3
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:290   AAGAGGAUAUGUUGUGCUUG   309

0.0 Arabidopsis thaliana cytochrome c oxidase 17 (COX17), mRNA cytochrome c oxidase 17(COX17) coding protein psRNATarget
NM_104181.5
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:217   AAGAGGAUAUGUUGUGCUUG   236

0.0 Arabidopsis thaliana Cytochrome C oxidase copper chaperone (COX17) mRNA Cytochrome C oxidase copper chaperone (COX17)(AT1G53030) coding protein psRNATarget
NM_001338160.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:395   AAGAGGAUAUGUUGUGCUUG   414

0.0 Arabidopsis thaliana cytochrome c oxidase 17 (COX17), partial mRNA cytochrome c oxidase 17(COX17) coding protein psRNATarget
AF349684.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:148   AAGAGGAUAUGUUGUGCUUG   167

0.0 Arabidopsis thaliana copper chaperone COX17-1 mRNA, complete cds NA coding protein psRNATarget
AF349685.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:158   AAGAGGAUAUGUUGUGCUUG   177

0.0 Arabidopsis thaliana copper chaperone COX17-2 mRNA, complete cds NA coding protein psRNATarget
AF505654.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:191   AAGAGGAUAUGUUGUGCUUG   210

0.0 Arabidopsis thaliana Cu-chaperone (COX17) mRNA, complete cds NA coding protein psRNATarget
AY084685.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:163   AAGAGGAUAUGUUGUGCUUG   182

0.0 Arabidopsis thaliana clone 11496 mRNA, complete sequence NA coding protein psRNATarget
BT024522.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:91   AAGAGGAUAUGUUGUGCUUG   110

0.0 Arabidopsis thaliana At3g15352 mRNA, complete cds NA coding protein psRNATarget
BT024519.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  ||||||||||||||||||||
targets:85   AAGAGGAUAUGUUGUGCUUG   104

0.0 Arabidopsis thaliana At1g53030 mRNA, complete cds NA coding protein psRNATarget
NM_001336886.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  |=||||||=|||||||||||
targets:1523   AGGAGGAUGUGUUGUGCUUG   1542

2.5 Arabidopsis thaliana PQ-loop repeat family protein / transmembrane family protein mRNA PQ-loop repeat family protein / transmembrane family protein(AT2G41050) coding protein psRNATarget
NM_001336887.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  |=||||||=|||||||||||
targets:1485   AGGAGGAUGUGUUGUGCUUG   1504

2.5 Arabidopsis thaliana PQ-loop repeat family protein / transmembrane family protein mRNA PQ-loop repeat family protein / transmembrane family protein(AT2G41050) coding protein psRNATarget
NM_001336888.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  |=||||||=|||||||||||
targets:1371   AGGAGGAUGUGUUGUGCUUG   1390

2.5 Arabidopsis thaliana PQ-loop repeat family protein / transmembrane family protein mRNA PQ-loop repeat family protein / transmembrane family protein(AT2G41050) coding protein psRNATarget
NM_180009.2
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  |=||||||=|||||||||||
targets:1371   AGGAGGAUGUGUUGUGCUUG   1390

2.5 Arabidopsis thaliana PQ-loop repeat family protein / transmembrane family protein mRNA PQ-loop repeat family protein / transmembrane family protein(AT2G41050) coding protein psRNATarget
AY080611.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  |=||||||=|||||||||||
targets:1236   AGGAGGAUGUGUUGUGCUUG   1255

2.5 Arabidopsis thaliana unknown protein (At2g41050) mRNA, complete cds NA coding protein psRNATarget
AY133749.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  |=||||||=|||||||||||
targets:1020   AGGAGGAUGUGUUGUGCUUG   1039

2.5 Arabidopsis thaliana clone U19895 unknown protein (At2g41050) mRNA, complete cds NA coding protein psRNATarget
NM_001336885.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  |=||||||=|||||||||||
targets:827   AGGAGGAUGUGUUGUGCUUG   846

2.5 Arabidopsis thaliana PQ-loop repeat family protein / transmembrane family protein mRNA PQ-loop repeat family protein / transmembrane family protein(AT2G41050) coding protein psRNATarget
NM_001339126.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  =||||*|||||||||*||||
targets:1310   GAGAGAAUAUGUUGUUCUUG   1329

2.5 Arabidopsis thaliana NAC domain containing protein 60 (NAC060), mRNA NAC domain containing protein 60(NAC060) coding protein psRNATarget
NM_114297.3
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  =||||*|||||||||*||||
targets:1223   GAGAGAAUAUGUUGUUCUUG   1242

2.5 Arabidopsis thaliana NAC domain containing protein 60 (NAC060), mRNA NAC domain containing protein 60(NAC060) coding protein psRNATarget
BX823820.1
ncRNA:20   UUCUCCUAUACAACACGAAC   1
  =||||*|||||||||*||||
targets:1159   GAGAGAAUAUGUUGUUCUUG   1178

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS7ZC02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
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