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BaseInfo

ncRNA ID ath-miR171c-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:22930089-22930204 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 7 - UUGAGCCGUGCCAAUAUCACG - 27
Stem-loop(if miRNA)        ACUA   GACAUCAAAUACGAGAUAUUGGUGCGGUUCAAUCAGAAAACCGU
UGAGCGC    UCG                                            A
|||||||    |||
AUUUGCG    CUA                                            C
       --CA   UAACCGUGCCGAGUUAGUUUAUUUGGCUAGAAAUUUUGUUUUCU
Stem-loop sequence UGAGCGCACUAUCGGACAUCAAAUACGAGAUAUUGGUGCGGUUCAAUCAGAAAACCGUACUCUUUUGUUUUAAAGAUCGGUUUAUUUGAUUGAGCCGUGCCAAUAUCACGCGUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AF036303.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:132   GGGGAUAUUGGCGCGGCUCAA   152

2.5 Arabidopsis thaliana scarecrow-like 6 (SCL6) mRNA, partial cds NA coding protein psRNATarget
BX820692.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:298   AGGGAUAUUGGCGCGGCUCAA   318

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH60ZB03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY133537.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:672   GGGGAUAUUGGCGCGGCUCAA   692

2.5 Arabidopsis thaliana At4g00150/F6N15_20 mRNA, complete cds NA coding protein psRNATarget
BX826491.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:658   GGGGAUAUUGGCGCGGCUCAA   678

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB30ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX827001.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:639   GGGGAUAUUGGCGCGGCUCAA   659

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZC09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BX826648.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:734   GGGGAUAUUGGCGCGGCUCAA   754

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB50ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY096372.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:801   AGGGAUAUUGGCGCGGCUCAA   821

2.5 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds NA coding protein psRNATarget
BT053760.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:882   AGGGAUAUUGGCGCGGCUCAA   902

2.5 Arabidopsis thaliana unknown protein (At2g45160) mRNA, complete cds NA coding protein psRNATarget
BT020591.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:901   AGGGAUAUUGGCGCGGCUCAA   921

2.5 Arabidopsis thaliana At2g45160 gene, complete cds NA coding protein psRNATarget
AF462831.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:755   GGGGAUAUUGGCGCGGCUCAA   775

2.5 Arabidopsis thaliana AT4g00150/F6N15_20 mRNA, complete cds NA coding protein psRNATarget
BX819093.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:933   AGGGAUAUUGGCGCGGCUCAA   953

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZE06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY064062.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:943   AGGGAUAUUGGCGCGGCUCAA   963

2.5 Arabidopsis thaliana putative scarecrow protein (At3g60630) mRNA, complete cds NA coding protein psRNATarget
BX823015.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:1041   AGGGAUAUUGGCGCGGCUCAA   1061

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB80ZC11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT004053.1
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:1000   AGGGAUAUUGGCGCGGCUCAA   1020

2.5 Arabidopsis thaliana clone RAFL15-13-A09 (R20463) putative SCARECROW gene regulator (At2g45160) mRNA, complete cds NA coding protein psRNATarget
NM_116232.5
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:1062   GGGGAUAUUGGCGCGGCUCAA   1082

2.5 Arabidopsis thaliana GRAS family transcription factor (HAM3), mRNA GRAS family transcription factor(HAM3) coding protein psRNATarget
NM_115927.5
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:1097   AGGGAUAUUGGCGCGGCUCAA   1117

2.5 Arabidopsis thaliana GRAS family transcription factor (HAM2), mRNA GRAS family transcription factor(HAM2) coding protein psRNATarget
NM_130079.3
ncRNA:21   GCACUAUAACCGUGCCGAGUU   1
  *|*|||||||||=||||||||
targets:1301   AGGGAUAUUGGCGCGGCUCAA   1321

2.5 Arabidopsis thaliana GRAS family transcription factor (HAM1), mRNA GRAS family transcription factor(HAM1) coding protein psRNATarget

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis";
Sunkar R, Zhu JK;
Plant Cell. 16:2001-2019(2004).
3 PMID:16040653
"Expression of Arabidopsis MIRNA genes";
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
Plant Physiol. 138:2145-2154(2005).
4 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
5 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
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