ncRNA ID | ath-miRf10692-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 21 |
Mature sequence(if miRNA) | NA - ACUUUUCACUGUUUGAUUCGU - NA |
Stem-loop(if miRNA) |
                                                                  AUAUA     -A   A CAAAAUAGUCACUUUUCACUGUUUGAUUCGUACACUUGGAUUGUACAUCACUUUUAGUGUACAAAU     UAAAA  UAC C ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||  ||| A GUUUUAUCAGUGAAAAGUGACAAACUAAGCAUGUGAACCUAACAUGUAGUGAAAAUCACAUGUUUA     AUUUU  AUG G                                                                   ----C     AC   C |
Stem-loop sequence | CAAAAUAGUCACUUUUCACUGUUUGAUUCGUACACUUGGAUUGUACAUCACUUUUAGUGUACAAAUAUAUAUAAAAAUACACAGCGUACAUUUUACAUUUGUACACUAAAAGUGAUGUACAAUCCAAGUGUACGAAUCAAACAGUGAAAAGUGACUAUUUUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AF223948.1 |
|
2.0 | Arabidopsis thaliana biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA, nuclear gene encoding plastid protein, complete cds | NA | coding protein | psRNATarget | |||||||||
NM_121557.4 |
|
2.0 | Arabidopsis thaliana biotin carboxyl carrier protein 2 (BCCP2), mRNA | biotin carboxyl carrier protein 2(BCCP2) | coding protein | psRNATarget | |||||||||
AY091008.1 |
|
3.0 | Arabidopsis thaliana putative vacuolar proton-ATPase subunit (At2g28520) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
NM_179791.2 |
|
3.0 | Arabidopsis thaliana vacuolar proton ATPase A1 (VHA-A1), mRNA | vacuolar proton ATPase A1(VHA-A1) | coding protein | psRNATarget |