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BaseInfo

ncRNA ID ath-miRf10692-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - ACUUUUCACUGUUUGAUUCGU - NA
Stem-loop(if miRNA)                                                                   AUAUA     -A   A
CAAAAUAGUCACUUUUCACUGUUUGAUUCGUACACUUGGAUUGUACAUCACUUUUAGUGUACAAAU     UAAAA  UAC C
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||  ||| A
GUUUUAUCAGUGAAAAGUGACAAACUAAGCAUGUGAACCUAACAUGUAGUGAAAAUCACAUGUUUA     AUUUU  AUG G
                                                                  ----C     AC   C
Stem-loop sequence CAAAAUAGUCACUUUUCACUGUUUGAUUCGUACACUUGGAUUGUACAUCACUUUUAGUGUACAAAUAUAUAUAAAAAUACACAGCGUACAUUUUACAUUUGUACACUAAAAGUGAUGUACAAUCCAAGUGUACGAAUCAAACAGUGAAAAGUGACUAUUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AF223948.1
ncRNA:21   UGCUUAGUUUGUCACUUUUCA   1
  ||*|||*||||||||||||||
targets:1188   ACAAAUAAAACAGUGAAAAGU   1208

2.0 Arabidopsis thaliana biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA, nuclear gene encoding plastid protein, complete cds NA coding protein psRNATarget
NM_121557.4
ncRNA:21   UGCUUAGUUUGUCACUUUUCA   1
  ||*|||*||||||||||||||
targets:1487   ACAAAUAAAACAGUGAAAAGU   1507

2.0 Arabidopsis thaliana biotin carboxyl carrier protein 2 (BCCP2), mRNA biotin carboxyl carrier protein 2(BCCP2) coding protein psRNATarget
AY091008.1
ncRNA:21   UGCUUA-GUUUGUCACUUUUCA   1
  |=||||-||||||||||||||*
targets:479   AUGAAUUCAAACAGUGAAAAGC   500

3.0 Arabidopsis thaliana putative vacuolar proton-ATPase subunit (At2g28520) mRNA, complete cds NA coding protein psRNATarget
NM_179791.2
ncRNA:21   UGCUUA-GUUUGUCACUUUUCA   1
  |=||||-||||||||||||||*
targets:575   AUGAAUUCAAACAGUGAAAAGC   596

3.0 Arabidopsis thaliana vacuolar proton ATPase A1 (VHA-A1), mRNA vacuolar proton ATPase A1(VHA-A1) coding protein psRNATarget