Search result

BaseInfo

ncRNA ID	novel_bol_miR59
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC9:521937-522032 [+]
Reference genome	BOL
Source	SRR961924;SRR961925
Length	23
Mature sequence(if miRNA)	74 - UCGGACCAGGCUUCAUCCCCCUC - 96
Stem-loop(if miRNA)	--    A   UU      A        AU   C           GCAU   GGGG AUG  GUUUGG UCGAGGAU  CAU AUAUGCAUAAU    A   |||| |||  |||||| ||||||||  ||| |||||||||||    C   CCCC UAC  CGGACC GGCUCUUA  GUA UAUACGUGUUA    A CU    C   UU      A        AU   -           AUAU
Stem-loop sequence	GGGGAAUGUUGUUUGGAUCGAGGAUAUCAUCAUAUGCAUAAUGCAUACAUAUAAUUGUGCAUAUAUGUAAUUCUCGGACCAGGCUUCAUCCCCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013732033.1	ncRNA:23   CUCCCCCUACUUCGGACCAGGCU   1   ||**||||||||||||||||||= targets:637   GAUUGGGAUGAAGCCUGGUCCGG   659 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-9 (LOC106295996), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-9(LOC106295996)	coding protein	psRNATarget
XM_013732032.1	ncRNA:23   CUCCCCCUACUUCGGACCAGGCU   1   ||**||||||||||||||||||= targets:765   GAUUGGGAUGAAGCCUGGUCCGG   787 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-9 (LOC106295996), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-9(LOC106295996)	coding protein	psRNATarget
XM_013781810.1	ncRNA:23   CUCCCCCUACUUCGGACCAGGCU   1   ||**||||||||||||||||||= targets:899   GAUUGGGAUGAAGCCUGGUCCGG   921 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-14 (LOC106342776), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-14(LOC106342776)	coding protein	psRNATarget
XM_013781809.1	ncRNA:23   CUCCCCCUACUUCGGACCAGGCU   1   ||**||||||||||||||||||= targets:899   GAUUGGGAUGAAGCCUGGUCCGG   921 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-14 (LOC106342776), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-14(LOC106342776)	coding protein	psRNATarget
XM_013766861.1	ncRNA:23   CUCCCCCUACUUCGGACCAGGCU   1   |***||||||||||||||||||= targets:963   GCCUGGGAUGAAGCCUGGUCCGG   985 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-8 (LOC106328424), mRNA	homeobox-leucine zipper protein ATHB-8(LOC106328424)	coding protein	psRNATarget
XM_013782140.1	ncRNA:23   CUCCCCCUACUUCGGACCAGGCU   1   ||**||*|||||||||||||||= targets:1058   GAUUGGUAUGAAGCCUGGUCCGG   1080 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-14 (LOC106343033), mRNA	homeobox-leucine zipper protein ATHB-14(LOC106343033)	coding protein	psRNATarget