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BaseInfo

ncRNA ID	novel_bol_miR54
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC9:3109084-3109163 [+]
Reference genome	BOL
Source	SRR961924;SRR961925
Length	20
Mature sequence(if miRNA)	1 - UGGAGAAGCAGGGCACGUGC - 20
Stem-loop(if miRNA)	--     A  C              CUA    GA   CUG   UGGAG AG AGGGCACGUGCGAA   AUGA  GAU   U   ||||| || ||||||||||||||   ||||  |||   ACCUC UC UCUUGUGCACGUUU   UACU  UUG   A CA     A  A              UUA    AG   UAC
Stem-loop sequence	UGGAGAAGCAGGGCACGUGCGAACUAAUGAGAGAUCUGUACAUGUUGAUCAUAUUUUUGCACGUGUUCUACUACUCCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013754581.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   *=|||||||||||||||||| targets:778   UUACGUGCCCUGCUUCUCCA   797 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 100 (LOC106316695), mRNA	NAC domain-containing protein 100(LOC106316695)	coding protein	psRNATarget
XM_013763217.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   *=|||||||||||||||||| targets:782   UUACGUGCCCUGCUUCUCCA   801 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 100-like (LOC106325190), mRNA	NAC domain-containing protein 100-like(LOC106325190)	coding protein	psRNATarget
XM_013740365.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   *=|||||||||||||||||| targets:898   UUACGUGCCCUGCUUCUCCA   917 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 100 (LOC106303998), mRNA	NAC domain-containing protein 100(LOC106303998)	coding protein	psRNATarget
XM_013763086.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   *=|||||||||||||||||| targets:816   UUACGUGCCCUGCUUCUCCA   835 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 100-like (LOC106325060), mRNA	NAC domain-containing protein 100-like(LOC106325060)	coding protein	psRNATarget
XM_013771044.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   |||*|||||||||||||||| targets:750   GCAAGUGCCCUGCUUCUCCA   769 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 21/22-like (LOC106332572), mRNA	NAC domain-containing protein 21/22-like(LOC106332572)	coding protein	psRNATarget
XM_013728918.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   |||*|||||||||||||||| targets:750   GCAAGUGCCCUGCUUCUCCA   769 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 21/22 (LOC106293262), mRNA	NAC domain-containing protein 21/22(LOC106293262)	coding protein	psRNATarget
XM_013769589.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   |||*|||||||||||||||| targets:865   GCAAGUGCCCUGCUUCUCCA   884 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 21/22 (LOC106331268), mRNA	NAC domain-containing protein 21/22(LOC106331268)	coding protein	psRNATarget
XM_013729784.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   |||||||=|||||||||||| targets:627   GCACGUGUCCUGCUUCUCCA   646 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea protein CUP-SHAPED COTYLEDON 1 (LOC106294200), mRNA	protein CUP-SHAPED COTYLEDON 1(LOC106294200)	coding protein	psRNATarget
XM_013753778.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   *||||||||*|||||||||= targets:830   UCACGUGCCAUGCUUCUCCG   849 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 59-like (LOC106315933), transcript variant X2, mRNA	NAC domain-containing protein 59-like(LOC106315933)	coding protein	psRNATarget
XM_013758079.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   *||||||*|||||||||||= targets:803   UCACGUGACCUGCUUCUCCG   822 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 92 (LOC106319699), mRNA	NAC domain-containing protein 92(LOC106319699)	coding protein	psRNATarget
XM_013753777.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   *||||||||*|||||||||= targets:832   UCACGUGCCAUGCUUCUCCG   851 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 59-like (LOC106315933), transcript variant X1, mRNA	NAC domain-containing protein 59-like(LOC106315933)	coding protein	psRNATarget
XM_013734737.1	ncRNA:20   CGUGCACGGGACGAAGAGGU   1   *||||||*|||||||||||= targets:988   UCACGUGACCUGCUUCUCCG   1007 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 92-like (LOC106298602), mRNA	NAC domain-containing protein 92-like(LOC106298602)	coding protein	psRNATarget