Search result

BaseInfo

ncRNA ID novel_bol_miR52
Species Brassica oleracea
Class miRNA
Genome position ChrC8:94329-94495 [+]
Reference genome BOL
Source SRR961924
Length 24
Mature sequence(if miRNA) 1 - AACGGAAUAUAAGAACUCGUCUCU - 24
Stem-loop(if miRNA) --AA      A                  C                        A            AGAAU       -C  U
    CGGAAU UAAGAACUCGUCUCUUAA UUUUAGCUAAAUAAAGCUAAGAAC GGUUCUUAAAUA     UUAAGAA  GU U
    |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||     |||||||  ||
    GCCUUA AUUCUUGGGCAGAGAAUU AAAAUCGAUUUAUUUCGAUUCUUG UCAAGAAUUUAU     GAUUUUU  CA U
AAUC      A                  A                        G            AAAUC       UC  U
Stem-loop sequence AACGGAAUAUAAGAACUCGUCUCUUAACUUUUAGCUAAAUAAAGCUAAGAACAGGUUCUUAAAUAAGAAUUUAAGAACGUUUUUACCUUUUUUAGCUAAAUAUUUAAGAACUGGUUCUUAGCUUUAUUUAGCUAAAAAUUAAGAGACGGGUUCUUAAAUUCCGCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013751975.1
ncRNA:24   UCUCUGCUCAAGAAUAUAAGGCAA   1
  ****=|||*||||||||||=||||
targets:120   CCCUGCGAUUUCUUAUAUUUCGUU   143

2.5 PREDICTED: Brassica oleracea var. oleracea cannabidiolic acid synthase-like 2 (LOC106314025), mRNA cannabidiolic acid synthase-like 2(LOC106314025) coding protein psRNATarget