ncRNA ID | novel_bol_miR52 |
Species | Brassica oleracea |
Class | miRNA |
Genome position | ChrC8:94329-94495 [+] |
Reference genome | BOL |
Source | SRR961924 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AACGGAAUAUAAGAACUCGUCUCU - 24 |
Stem-loop(if miRNA) |
--AA      A                  C                        A            AGAAU       -C  U     CGGAAU UAAGAACUCGUCUCUUAA UUUUAGCUAAAUAAAGCUAAGAAC GGUUCUUAAAUA     UUAAGAA  GU U     |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||     |||||||  ||     GCCUUA AUUCUUGGGCAGAGAAUU AAAAUCGAUUUAUUUCGAUUCUUG UCAAGAAUUUAU     GAUUUUU  CA U AAUC      A                  A                        G            AAAUC       UC  U |
Stem-loop sequence | AACGGAAUAUAAGAACUCGUCUCUUAACUUUUAGCUAAAUAAAGCUAAGAACAGGUUCUUAAAUAAGAAUUUAAGAACGUUUUUACCUUUUUUAGCUAAAUAUUUAAGAACUGGUUCUUAGCUUUAUUUAGCUAAAAAUUAAGAGACGGGUUCUUAAAUUCCGCUAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013751975.1 |
|
2.5 | PREDICTED: Brassica oleracea var. oleracea cannabidiolic acid synthase-like 2 (LOC106314025), mRNA | cannabidiolic acid synthase-like 2(LOC106314025) | coding protein | psRNATarget |