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BaseInfo

ncRNA ID	novel_bol_miR48
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC8:28042055-28042110 [-]
Reference genome	BOL
Source	SRR961924
Length	20
Mature sequence(if miRNA)	1 - AGAGAGAUCUGAUGUGGAUA - 20
Stem-loop(if miRNA)	--A   G   U        AAUC    C    UUG AUC GAUUUCUU    GGCC A    ||| ||| ||||||||    |||| A    GGU UAG CUAGAGAG    CCGG A AUA   G   U        -AAC    U
Stem-loop sequence	AUUGGAUCUGAUUUCUUAAUCGGCCCAAAUGGCCCAAGAGAGAUCUGAUGUGGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013746587.1	ncRNA:20   AUAGGUGUAGUCUAGAGAGA   1   *|||||*||||||||||||| targets:377   GAUCCAAAUCAGAUCUCUCU   396 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea protein IQ-DOMAIN 14 (LOC106309539), mRNA	protein IQ-DOMAIN 14(LOC106309539)	coding protein	psRNATarget
XM_013734533.1	ncRNA:20   AUAGGUGUAGUCUAGAGAGA   1   *||||=*||||||||||||| targets:356   GAUCCGAAUCAGAUCUCUCU   375 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106298416 (LOC106298416), mRNA	uncharacterized LOC106298416(LOC106298416)	coding protein	psRNATarget
XM_013765458.1	ncRNA:20   AUAGGUGUAGUCUAGAGAGA   1   *|||=|||*||||||||||| targets:87   GAUCUACAGCAGAUCUCUCU   106 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea ABC transporter F family member 1 (LOC106327331), mRNA	ABC transporter F family member 1(LOC106327331)	coding protein	psRNATarget
XM_013762286.1	ncRNA:20   AUAGGUGUAGUCUAGAGAGA   1   *|*||||||||*|||||||| targets:599   CAGCCACAUCAAAUCUCUCU   618 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106324290 (LOC106324290), mRNA	uncharacterized LOC106324290(LOC106324290)	coding protein	psRNATarget